PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56943.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 365aa    MW: 41083.8 Da    PI: 6.5679
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56943.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.2e-51331591128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdee++++y  +kv ++ + +  +i+ v+++k+ePw+Lp+k+k +e+ewyf+s++d+ky+tg r+nrat+ gyWkatgkdke+++   
  MLOC_56943.2  33 LPPGFRFHPTDEEIIKFYVVPKVLDEAFVA-AAIEVVNLNKYEPWELPEKAKMGENEWYFYSRKDRKYPTGIRTNRATDVGYWKATGKDKEIFDPPL 128
                   79*************************998.78***************99999******************************************** PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +l+g+kktLvfykgrap+gekt+Wvmheyr+
  MLOC_56943.2 129 TLIGMKKTLVFYKGRAPRGEKTNWVMHEYRI 159
                   *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5920195IPR003441NAC domain
PROSITE profilePS5100556.32633195IPR003441NAC domain
PfamPF023652.0E-2634159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVASNISITL ESIAEKASTM TDHLQVQQQA LELPPGFRFH PTDEEIIKFY VVPKVLDEAF  60
VAAAIEVVNL NKYEPWELPE KAKMGENEWY FYSRKDRKYP TGIRTNRATD VGYWKATGKD  120
KEIFDPPLTL IGMKKTLVFY KGRAPRGEKT NWVMHEYRIE SSKQLISNST TATSRISTTK  180
AASKEQWVVC RIFHKSTGLK KMVMPSYDMP MSMAAEHQHD FVGLDTLPPL MDYDMSSTLA  240
HPPLFPGATS YQLHNVESGS SMMGSVALPM MNDHYYGNHH HQVMAAPTLP LSLYQHQQQH  300
QQMMIHMGAD QGFMVGAEPG SGMSSMLSQE DAVAGLRNNY PGNTTATAVG ETSWMNMGMD  360
DIWQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-492820110174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56943.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197195.10.0NAC domain-containing protein 92-like isoform X1
TrEMBLA0A287Y2920.0A0A287Y292_HORVV; Uncharacterized protein
STRINGMLOC_56943.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-76NAC domain containing protein 38