PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56874.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 334aa    MW: 37644.4 Da    PI: 8.7471
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56874.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09283330347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E ++lvd+v+q+G+g W+ I r        Rt  ++k++w+++
     MLOC_56874.4 283 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNL 330
                      7**************************99999*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.855276334IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-12277332IPR009057Homeodomain-like
SuperFamilySSF466893.67E-14278332IPR009057Homeodomain-like
SMARTSM007179.3E-9280333IPR001005SANT/Myb domain
CDDcd116601.18E-17282332No hitNo description
PfamPF002492.8E-6283330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGLTNSCDVQ SSGCVVKDYK MVCKDAKHEL PTVEGIPKVE VEATSLIRYQ VLGPGNEKDT  60
PSCSYYRSED QQRSSNRLKG VSTDNDEPEG TLLDEQGAAK RLRKPTKRYI EELSDTETLD  120
STGKLSSPGK RAAHGEVLLR QRVTPLQEVD SLRITYPTRK DTFGGFSVHV PYASRMRRGR  180
PRRNFISFLD DDPPVECPEV QMAVETTLGK DGEHVNHVNS AVEVPLMKNA EKKGAHIETT  240
EKKGEHIEMA DNKETHSIEA DDICRTDAKT KTKRSLKRKH HRAWTLSEVL KLVDGVAQFG  300
PGKWSEIRRL SFASYSYRTS VDLKDKWRNL IRAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56874.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519310.0JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.11e-175uncharacterized protein LOC100846611 isoform X2
TrEMBLA0A287M9V50.0A0A287M9V5_HORVV; Uncharacterized protein
TrEMBLM0X4390.0M0X439_HORVV; Uncharacterized protein
STRINGMLOC_56874.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-44TRF-like 6