PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56874.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 643aa MW: 71644.8 Da PI: 4.8816 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.2e-09 | 525 | 572 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E ++lvd+v+q+G+g W+ I r Rt ++k++w+++ MLOC_56874.1 525 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNL 572 7**************************99999*99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.855 | 518 | 577 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-12 | 519 | 576 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-14 | 520 | 579 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-9 | 522 | 575 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.66E-17 | 524 | 574 | No hit | No description |
Pfam | PF00249 | 6.8E-6 | 525 | 572 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MEVDTLQDAQ ETKNGENDFE ENVSSDPVVY QLVRVEGDGT LVPPTEDEVL QIEQFLDDKV 60 DLPSIDDVGN VEDFFTNDCM LLKEPDFEDG YSELETNGEI HTHQFDADLE VDRLKPSDDS 120 LDLPSECTVV HDHEPDKLNT EQEANNIVHQ DNASTETPKS TVLNDSCSAE KEKADACSRS 180 VNNSSTGPSV SGVTSSVPDF SILRGEVCLD DLTIRELQEA FRATFGRETT VKDKLWLKRR 240 ITMGLTNSCD VQSSGCVVKD YKMVCKDAKH ELPTVEGIPK VEVEATSLIR YQVLGPGNEK 300 DTPSCSYYRS EDQQRSSNRL KGVSTDNDEP EGTLLDEQGA AKRLRKPTKR YIEELSDTET 360 LDSTGKLSSP GKRAAHGEVL LRQRVTPLQE VDSLRITYPT RKDTFGGFSV HVPYASRMRR 420 GRPRRNFISF LDDDPPVECP EVQMAVETTL GKDGEHVNHV NSAVEVPLMK NAEKKGAHIE 480 TTEKKGEHIE MADNKETHSI EADDICRTDA KTKTKRSLKR KHHRAWTLSE VLKLVDGVAQ 540 FGPGKWSEIR RLSFASYSYR TSVDLKDKWR NLIRASQTQL SPENDGVCPR KSNPSIIPIP 600 PSILLRVKEL VELQPQAGNL AAAIKFSGQS SKVAHGRGSS GFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56874.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951931 | 0.0 | JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570524.1 | 0.0 | uncharacterized protein LOC100846611 isoform X2 | ||||
TrEMBL | M0X439 | 0.0 | M0X439_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56874.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-78 | TRF-like 6 |