PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_56869.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 846aa MW: 96297.6 Da PI: 7.0606

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_56869.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.6	2.7e-25	95	183	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+ tkl++eHnHe+ MLOC_56869.1 95 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSKEGFSKEKRVVaGKKTRKRLASIREGCNAMLEVLRRGDNKWVATKLVKEHNHEV 183 9************************************999887646777888899****************************96 PP
2	FAR1	63.5	6.2e-20	217	303	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA ++GF+vr+++s+ks ++++ ++ ++vCsk+ +++ ++++ e ++r +r gC+a +++ ++++++w+v+kl leH+Hel+p MLOC_56869.1 217 FYYSYAIRAGFEVRVRQSRKS-QDESLKMLKLVCSKHRYHSGRENN--GEDTKRDPSRDGCNALFEIIRKDKSVWRVSKLILEHTHELNP 303 9*****************9.6777***********99988..89999999*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-23	95	183	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.0E-17	217	303	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-19	404	494	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.569	671	719	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-5	679	716	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	694	721	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MEVGGQAMME PQGVELEDDS INFWASLGVS THVHGVDQMA LHNVHILDHQ GQSLPPSMVS 60 HPESVCKELF PVEADPCLEP RVGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES 120 IIMLRFVCSK EGFSKEKRVV AGKKTRKRLA SIREGCNAML EVLRRGDNKW VATKLVKEHN 180 HEVGMPSTVH YIATETDTMV DPYIDMEFES LESAKTFYYS YAIRAGFEVR VRQSRKSQDE 240 SLKMLKLVCS KHRYHSGREN NGEDTKRDPS RDGCNALFEI IRKDKSVWRV SKLILEHTHE 300 LNPAPASSVC CVRSQGEILV IAKNFADTRN LLLNGQDSQP RREIRYNDLG PEDAQSLLEY 360 LQKVQAEDPA FFYAVQLDKH EDTVNIFWAD AGARMAYYHF GDAVRFETAY RRNKEHIPIV 420 IFSGVNHHVQ PVIFGCALLV DESEESFVWL FEKWLEAMHA RPPVSFVTEL NQEMAAAAAK 480 VLPDTCHIFC GKHILGTVKE ELHSIYPGLD HFISDLRKCI DGCRIEESFE SCWESVLIKH 540 GFRNNEHLQS LYDVRKRWAP AYTKQSFHAR NLLAQSCENL EKIIDTYFSS KTQLQVAVQQ 600 LEQAICNFHA KETQADYLTM FQLPALRTAS PVEKQAGLVF SREVFDIFQE QFAESFGYHA 660 ERLEDRMLHK YRLTVDDGDE EAHIVSFSPD QSTVCCSCCL FESCGILCRH ALRVFIIEGV 720 RFLPKAYVLK RWTKHAKSTV TLDNYIELRG YCEDPSTSRY NDLCYDAIKC AKEGSTSTER 780 YKIAKEALRK ALDEIMPIRN IRQQISQNCT SLQSPVKKFG AANGTSGKSI KRPALKNSLV 840 ESNGSR

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MEVGGQAMME PQGVELEDDS INFWASLGVS THVHGVDQMA LHNVHILDHQ GQSLPPSMVS  60
HPESVCKELF PVEADPCLEP RVGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES  120
IIMLRFVCSK EGFSKEKRVV AGKKTRKRLA SIREGCNAML EVLRRGDNKW VATKLVKEHN  180
HEVGMPSTVH YIATETDTMV DPYIDMEFES LESAKTFYYS YAIRAGFEVR VRQSRKSQDE  240
SLKMLKLVCS KHRYHSGREN NGEDTKRDPS RDGCNALFEI IRKDKSVWRV SKLILEHTHE  300
LNPAPASSVC CVRSQGEILV IAKNFADTRN LLLNGQDSQP RREIRYNDLG PEDAQSLLEY  360
LQKVQAEDPA FFYAVQLDKH EDTVNIFWAD AGARMAYYHF GDAVRFETAY RRNKEHIPIV  420
IFSGVNHHVQ PVIFGCALLV DESEESFVWL FEKWLEAMHA RPPVSFVTEL NQEMAAAAAK  480
VLPDTCHIFC GKHILGTVKE ELHSIYPGLD HFISDLRKCI DGCRIEESFE SCWESVLIKH  540
GFRNNEHLQS LYDVRKRWAP AYTKQSFHAR NLLAQSCENL EKIIDTYFSS KTQLQVAVQQ  600
LEQAICNFHA KETQADYLTM FQLPALRTAS PVEKQAGLVF SREVFDIFQE QFAESFGYHA  660
ERLEDRMLHK YRLTVDDGDE EAHIVSFSPD QSTVCCSCCL FESCGILCRH ALRVFIIEGV  720
RFLPKAYVLK RWTKHAKSTV TLDNYIELRG YCEDPSTSRY NDLCYDAIKC AKEGSTSTER  780
YKIAKEALRK ALDEIMPIRN IRQQISQNCT SLQSPVKKFG AANGTSGKSI KRPALKNSLV  840
ESNGSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_56869.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252774	0.0	AK252774.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf172k23, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169948.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020169949.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446U8X7	0.0	A0A446U8X7_TRITD; Uncharacterized protein
STRING	MLOC_56869.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-119	FAR1-related sequence 5