PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56804.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 296aa    MW: 31763.1 Da    PI: 8.6957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56804.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-1270114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
     MLOC_56804.2  70 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 114
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1664120IPR009057Homeodomain-like
PROSITE profilePS5129414.1865119IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1868117IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.9E-668120IPR009057Homeodomain-like
SMARTSM007176.5E-1069117IPR001005SANT/Myb domain
PfamPF002494.2E-1070114IPR001005SANT/Myb domain
CDDcd001671.04E-772115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVSMSTTPKP LEAAVAAVGG GGGDGGGGGK GKGKEQQLAA GPPMAVPADA AAAEEARMKV  60
RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK  120
NGTGEHLPPP RPKRKAAHPY PQKASKTGTY CPCFYFLVSG TNCLYFSSSA IMLTKLCLAP  180
VASQAVLSQQ PPLPPPRDQD GVIMSMDTSA VVPNTNANAL VPSWDNALVQ PTQVTSAVAT  240
NNCSSSIESQ SGTWPTSEAV EQENVLPRAM PDFSQVYNFL GSVFDPDTSG HLQRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56804.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606960.0AK360696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123J21.
GenBankAK3694120.0AK369412.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2090M12.
GenBankAK3769560.0AK376956.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178881.11e-139protein REVEILLE 8-like isoform X1
TrEMBLA0A287XPX10.0A0A287XPX1_HORVV; Uncharacterized protein
STRINGMLOC_56804.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.12e-54MYB_related family protein