PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56804.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 275aa    MW: 29405.2 Da    PI: 7.7188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56804.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-1270114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
     MLOC_56804.1  70 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 114
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-1664120IPR009057Homeodomain-like
PROSITE profilePS5129414.1865119IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1868117IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.3E-668120IPR009057Homeodomain-like
SMARTSM007176.5E-1069117IPR001005SANT/Myb domain
PfamPF002493.7E-1070114IPR001005SANT/Myb domain
CDDcd001678.79E-872115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVSMSTTPKP LEAAVAAVGG GGGDGGGGGK GKGKEQQLAA GPPMAVPADA AAAEEARMKV  60
RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK  120
NGTGEHLPPP RPKRKAAHPY PQKASKTAPV ASQAVLSQQP PLPPPRDQDG VIMSMDTSAV  180
VPNTNANALV PSWDNALVQP TQVTSAVATN NCSSSIESQS GTWPTSEAVE QENVLPRAMP  240
DFSQVYNFLG SVFDPDTSGH LQRLKAMDPI DVETV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606960.0AK360696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123J21.
GenBankAK3769560.0AK376956.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178881.11e-154protein REVEILLE 8-like isoform X1
SwissprotQ6R0H09e-77RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A287XPZ80.0A0A287XPZ8_HORVV; Uncharacterized protein
TrEMBLF2D9Y30.0F2D9Y3_HORVV; Predicted protein
STRINGMLOC_56804.21e-155(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.12e-64MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]