PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56753.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 353aa    MW: 38028.8 Da    PI: 6.6198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56753.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-163780146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
     MLOC_56753.2 37 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 80
                     899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-51730IPR009057Homeodomain-like
SuperFamilySSF466891.2E-201889IPR009057Homeodomain-like
PROSITE profilePS500904.0541831IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-243187IPR009057Homeodomain-like
PROSITE profilePS5129425.3383286IPR017930Myb domain
SMARTSM007172.1E-153684IPR001005SANT/Myb domain
PfamPF002491.1E-143780IPR001005SANT/Myb domain
CDDcd001671.47E-113979No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVDLNRIDLS PRCSGLQRCG KSCRLRWINY LRPDLKRGTF SEQEERTILD VHRILGNRWA  60
QIAKHLPGRT DNEVKNFWNS CIKKKLIAQG LDPKTHNLLP ASKNLLHVHD GTGSGSNPSN  120
NPAAGTQFHS PNGNRNGCAT PPFTISSPTK AVYDAAMVAP PVVAPGLYDV PNPGVLMGQH  180
DRDHQAAVVM QQGYPYIHNN GSGLLMSFRD HNAAGIHPSM DFMNGSSHSS SSMEYAAGMP  240
NGDVFNRGVA VFMDETAAMW ATVPDPGMGA RVEMAYQQQQ HHGLGQDEVA GPPPPPLING  300
GSSGSKGLDM MGVSSEVYGS AGTTTAFDIE LMESCGIFCG AAGNDMEQLQ WDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26188640108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56753.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040068e-47AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042598e-47AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149638e-47AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126158e-47CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166429.10.0transcription factor MYB26-like
TrEMBLM0X3N30.0M0X3N3_HORVV; Uncharacterized protein
STRINGMLOC_56753.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-55myb domain protein 67