PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5666.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 337aa    MW: 36789.5 Da    PI: 8.5398
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5666.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.51.4e-15263288126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ + +tG C+yGd+C+FaHg
  MLOC_5666.4 263 FKTELCNKWEETGACPYGDQCQFAHG 288
                  79***********************9 PP
2zf-CCCH18.34.1e-06301326126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykte Cr  + +  C+yG rC+F H+
  MLOC_5666.4 301 YKTEVCRMVLNGEVCPYGHRCHFRHS 326
                  9******999966**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.7E-19257295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-11259294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77262290IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10262289IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12263288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-12296326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8296328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807300328IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5300327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQEALVSPAN ADRLRSAFEL KPYAFGDQRL SSSPRYLPSG DDGLYRCSSP FSPSLGFSSP  60
SPLATSVSLS PSSSGSLVDD GDYDGAAAAD ATGHRLQLAR LALQYQEVAD RYEMCLSHLA  120
EAVDEAAVLR RENTELRVAN SDLARRVALL GGKETAAVVI ADEIRRFRLG EHKASKQRAP  180
EKLAVLPKSI SVRSNDYLKM NQAAPAAATP PAYSRKPRAA NVNPSPVTRA YLGLGVDGGK  240
KGEEHKAKQD AAGELDVYNQ GMFKTELCNK WEETGACPYG DQCQFAHGVS ELRPVIRHPR  300
YKTEVCRMVL NGEVCPYGHR CHFRHSLTAA ERLLRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-23263326467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5666.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605440.0AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.10.0zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-133C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A287L6P60.0A0A287L6P6_HORVV; Uncharacterized protein
STRINGMLOC_5666.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-60C3H family protein