PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56598.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 457aa MW: 49527.2 Da PI: 6.1742 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.4e-39 | 75 | 134 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s MLOC_56598.3 75 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNS 134 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-31 | 72 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.0E-32 | 77 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.733 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 81 | 117 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MKGDELREGK DNEMEVDAPQ AKENAETANS STLDHKKDDQ AQRSNAEEKA ASDPKEENEK 60 KSNDESGQDK VLKKPDKIIP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR 120 NVPVGAGRRK SKNSALHYRQ LLMAPDCLLG SRVDIPNTVN PEVLASLPSI PTQSASRNET 180 VLKFGPEVPL CESMVSVLNI EEQNVTNAGT VPRDETREDN LCASSTTSNN GLPSNAVPAG 240 QNGAPVYCNG VGPVPQYYLG APFMYPWSMG WNNLPVMVPG GSMPESTSPS ESCSTSSAPW 300 MNSPMMPGSR LPAPTFPYPV VPPALWGCLP SWPAAAWNTP WIGTNGCISP SGSSNSSCSG 360 NGSPTLGKHS RDPNPQKDDK EEKSLWVPKT LRIDDPDEAA KSSIWATLGI KPGDPGVFKP 420 FQFKGESKGQ PTDARPARAL QANPAAFSRS QSFQESS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56598.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189771.1 | 0.0 | cyclic dof factor 2-like | ||||
TrEMBL | M0X2Y2 | 0.0 | M0X2Y2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56598.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-65 | cycling DOF factor 2 |