PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56598.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 533aa    MW: 57521.9 Da    PI: 4.7928
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56598.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-39151210261
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                   ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  MLOC_56598.1 151 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNS 210
                   7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-31148208IPR003851Zinc finger, Dof-type
PfamPF027016.2E-32153209IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.733155209IPR003851Zinc finger, Dof-type
PROSITE patternPS013610157193IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSDQMDSGIK LFGRVIPLVP DAAPGPTEAD ATAGSERPPP PPEAEPEADK EQHKETEDKG  60
DSETKVDVPE EKGDSGMKGD ELREGKDNEM EVDAPQAKEN AETANSSTLD HKKDDQAQRS  120
NAEEKAASDP KEENEKKSND ESGQDKVLKK PDKIIPCPRC NSMDTKFCYY NNYNVNQPRH  180
FCKNCQRYWT AGGTMRNVPV GAGRRKSKNS ALHYRQLLMA PDCLLGSRVD IPNTVNPEVL  240
ASLPSIPTQS ASRNETVLKF GPEVPLCESM VSVLNIEEQN VTNAGTVPRD ETREDNLCAS  300
STTSNNGLPS NAVPAGQNGA PVYCNGVGPV PQYYLGAPFM YPWSMGWNNL PVMVPGGSMP  360
ESTSPSESCS TSSAPWMNSP MMPGSRLPAP TFPYPVVPPA LWGCLPSWPA AAWNTPWIGT  420
NGCISPSGSS NSSCSGNGSP TLGKHSRDPN PQKDDKEEKS LWVPKTLRID DPDEAAKSSI  480
WATLGIKPGD PGVFKPFQFK GESKGQPTDA RPARALQANP AAFSRSQSFQ ESS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189771.10.0cyclic dof factor 2-like
TrEMBLM0X2Y20.0M0X2Y2_HORVV; Uncharacterized protein
STRINGMLOC_56598.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-67cycling DOF factor 2