PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56567.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family RAV
Protein Properties Length: 348aa    MW: 38249.4 Da    PI: 10.1454
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56567.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.3e-1155103155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s++kGV   + +grW A+I++      r +r++lg+f   + Aa+a++ a ++++g
  MLOC_56567.1  55 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDQDSAARAYDVASLRYRG 103
                   689***9788.8*********......44*************************98 PP
2B393.11.9e-29169264187
                   EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+++F+ +  
  MLOC_56567.1 169 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrspetTTTTGNGVLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIMFSCSAY 264
                   89*************************99877666444448999***********************************************96543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-1555112IPR016177DNA-binding domain
CDDcd000189.99E-2155111No hitNo description
PfamPF008478.5E-755103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1856111IPR001471AP2/ERF domain
PROSITE profilePS5103220.19256111IPR001471AP2/ERF domain
SMARTSM003803.6E-2156117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-37165279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-29166274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-28167259No hitNo description
SMARTSM010199.7E-22169277IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296169278IPR003340B3 DNA binding domain
PfamPF023625.1E-27169264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGVEILSSMV EHSFQYSSGA SSATAESGAV GTPPRHLSLP VAIADESLTS RSASSRFKGV  60
VPQPNGRWGA QIYERHARVW LGTFPDQDSA ARAYDVASLR YRGGDAAFNF PCVVVEAELA  120
FLAAHSKAEI VDMLRKQTYA DELRQGLRRG RGMGVRAQPM PSWARVPLFE KAVTPSDVGK  180
LNRLVVPKQH AEKHFPLKRS PETTTTTGNG VLLNFEDGQG KVWRFRYSYW NSSQSYVLTK  240
GWSRFVREKG LGAGDSIMFS CSAYGQEKQF FIDCKKNTTV NGGKSASPLQ VMEIAKAEQV  300
RVVRLFGVDI AGVKRERAAT AEQGPQGWFK RQCMAHGQHS PALGDFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4616827513115DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620380.0AK362038.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001P16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191173.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020200371.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020201146.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
SwissprotQ9AWS01e-132Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLF2DDS10.0F2DDS1_HORVV; Predicted protein
STRINGMLOC_56567.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-94related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]