PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_56530.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 266aa MW: 30066.6 Da PI: 7.6756

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_56530.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.6	1.4e-29	36	141	1	98
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.. 87 f+k ltpsdv+k++rlv+pk++ae++ e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ MLOC_56530.2 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggdfP--GEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVVHFERVRGlg 130 99**************************98553..446678**********************************************886554 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +l+++ +r MLOC_56530.2 131 TGDRLFIGCRR 141 55556666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-39	30	147	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-28	33	129	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.93E-28	34	128	No hit	No description
Pfam	PF02362	4.7E-27	36	142	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.296	36	142	IPR003340	B3 DNA binding domain
SMART	SM01019	3.1E-23	36	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MAMHPLCQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLNGGDFP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDV 120 VHFERVRGLG TGDRLFIGCR RRGESAPPPP VRVPPPALNS GEQQPWSPMC YSTSGSYPTS 180 PANSYAYRRS VEQDHNDMLH AGESPREADA KSSTASAPPS RRLRLFGVNL DCGPEPEAEA 240 TTPMYGYTHQ NPYAPVPTVP TYWGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	5e-49	31	142	3	113	B3 domain-containing transcription factor NGA1
5os9_B	5e-49	31	142	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_56530.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185469.1	0.0	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	1e-132	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	M0X2M7	0.0	M0X2M7_HORVV; Uncharacterized protein
STRING	Traes_5BL_B98E347A8.1	0.0	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	2e-58	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]