PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_56124.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WOX

Protein Properties

Length: 267aa MW: 29650.8 Da PI: 6.1033

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_56124.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.6e-21	95	155	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ MLOC_56124.2 95 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 155 89***************99************************************97 PP
2	Wus_type_Homeobox	103.1	1.9e-33	94	157	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq MLOC_56124.2 94 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 157 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-17	89	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.819	91	156	IPR001356	Homeobox domain
SMART	SM00389	5.3E-14	93	160	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.34E-18	94	161	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-19	95	155	IPR001356	Homeobox domain
CDD	cd00086	1.45E-13	95	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEWDKASAAA AAAAAGETAE ERGGAGDALG YVKVMTDEQM EVLRKQISIY ATICEQLVEM 60 HRALTAHQDS IAGMRLGNLY CDPLMVHGGH KITARQRWTP TQMQLQILES IFDQGNGTPS 120 KQKIKDITAE LSQHGQISET NVYNWFQNRR ARSKRKQAAS SLPNNAESEA EGDEESPTDK 180 KPRSDGSQQQ SMAMRAHNPD RISEMHRHFD AAEREQVRGP MYGSSNDSGA RSSGGLGQMS 240 FYENVISNPR IDQFFQYRTG ESFDMSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	156	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_56124.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363822	0.0	AK363822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019D08.
GenBank	AK365419	0.0	AK365419.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034B06.
GenBank	AK365714	0.0	AK365714.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036K10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	1e-177	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-127	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0X0X0	0.0	M0X0X0_HORVV; Uncharacterized protein
STRING	MLOC_56124.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-62	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]