PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56120.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 614aa    MW: 63852.8 Da    PI: 8.5666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56120.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0596118123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C+k F r  nL+ H r H
  MLOC_56120.1  96 FVCEVCNKGFQREQNLQLHRRGH 118
                   89*******************88 PP
2zf-C2H211.50.00091173195123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC +C+k++  +s+ k H + +
  MLOC_56120.1 173 WKCDKCSKRYAVQSDWKAHSKIC 195
                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-695118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-795118No hitNo description
SMARTSM003550.004196118IPR015880Zinc finger, C2H2-like
PfamPF121714.0E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09496118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-7168193No hitNo description
SMARTSM00355140173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGMRDGD QQDQMKPLIS QQQHQQHQQH QLAAVALSGA GNAAPAASSQ  60
GAPAAAPPAK KKRTLPDPDA EVIALSPKTL MATNRFVCEV CNKGFQREQN LQLHRRGHNL  120
PWKLKQKNPN QVQRRRVYLC PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK  180
RYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR LPPTSLSSLT  240
SHLYGATNAG NMALSLSQVG SHLNTLQHDG HHHHPSPELL RLGGAAGGGS SSIAARLDHL  300
LSPSGASAFR PPQQQPQSAF FLNAAPGQDF GDDAGNGQHS YLQSKPFHGL MQLPDLQGNG  360
AGGPASSGHG LFNLGFFSNN GNSSGSSHEH ASQGMMSNDQ FSGGAGGGGG GGGSEVSAAG  420
IFGGNFVGGD HISQAGMYND QAPMLPQMSA TALLQKAAQM GATSSPNGAA SMFRGFVGSS  480
PHARQGTPQQ QMDQNDANLN ELMNSLAAGG GVNAAAMFGG ANAGPAGMFD PRMCDMDQHE  540
VKFSQGGGGV GGNGGGAGGG GGGDMTRDFL GVGGGGIVRG ISTPRGDHHQ SSSDMSSLEA  600
EMKSASSFNG GRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34169235369Zinc finger protein JACKDAW
5b3h_F3e-34169235369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401413SGGAGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743080.0AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197691.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197692.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197693.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A446MKR70.0A0A446MKR7_TRITD; Uncharacterized protein
STRINGMLOC_56120.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2