PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56050.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C3H | ||||||||
Protein Properties | Length: 1264aa MW: 140401 Da PI: 4.7373 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1e-08 | 657 | 679 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p MLOC_56050.4 657 NCPSYMSKGTCTYGPSCHFNHPP 679 7********************96 PP | |||||||
2 | zf-CCCH | 35.2 | 2.1e-11 | 716 | 738 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ MLOC_56050.4 716 RNCDYYMRTGACRYGKNCHFNHP 738 79********************9 PP | |||||||
3 | zf-CCCH | 23.2 | 1.2e-07 | 909 | 935 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++ +C+f ar+G Ck+ + Ck++H++ MLOC_56050.4 909 PGRQECPFLARYGDCKFASACKYHHPK 935 57899********************96 PP | |||||||
4 | zf-CCCH | 28.7 | 2.2e-09 | 949 | 975 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f++r+G Ck+ + C+++H++ MLOC_56050.4 949 PGRPDCPFYMRFGDCKFASACNYHHPK 975 689**********************96 PP | |||||||
5 | zf-CCCH | 36.5 | 8.2e-12 | 984 | 1009 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C+f+++ G+Ck+G++CkF H++ MLOC_56050.4 984 EEPECPFYMKRGFCKFGAQCKFYHPE 1009 5799********************96 PP | |||||||
6 | zf-CCCH | 21.2 | 5.1e-07 | 1080 | 1106 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ Cr+++++G Cky + C F+H++ MLOC_56050.4 1080 PGQPDCRYYMQFGKCKYLSACIFHHPK 1106 5789*********************96 PP | |||||||
7 | zf-CCCH | 26.8 | 8.7e-09 | 1131 | 1155 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++++G C++G+ C F H++ MLOC_56050.4 1131 MPDCPFYMKSGKCQFGSLCEFRHPK 1155 789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.63E-5 | 652 | 679 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.666 | 652 | 680 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-4 | 652 | 679 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-7 | 657 | 679 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 658 | 677 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 712 | 740 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 712 | 739 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-6 | 715 | 740 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-9 | 716 | 738 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 718 | 738 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.32 | 908 | 935 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.784 | 908 | 936 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 910 | 935 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 948 | 976 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0028 | 948 | 975 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-6 | 949 | 975 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 982 | 1010 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-7 | 982 | 1009 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 984 | 1009 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 986 | 1010 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 988 | 1009 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.516 | 1079 | 1107 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0066 | 1079 | 1106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 1081 | 1106 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.488 | 1128 | 1156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-4 | 1128 | 1155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 1131 | 1155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.07 | 1196 | 1223 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.634 | 1196 | 1224 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1264 aa Download sequence Send to blast |
MDDRHPHPHR DTSLVHHHHL KVADAPIHDD DHHLKVADAP IHDDDHHLKL LDATAPPTPR 60 DHAIAAAAAH QQQELPTHGL PTGSTRDNRA VQPQEVQLEQ GVVALAGVGL ATQDDTAVDR 120 DATIHDHNYA IAVDAHHQEQ VKPLLEQCTS TSTSCEDLGT PAMDNDDDAV QLQEVMEQQH 180 ATHPRDEYIA AEEQSEMLDR ELGSTEKADA VPVQEAAEQG LVGTDGESAD ATAVDGHDMA 240 VEQCVTCHDL GTTTENDGAK DDQEQGVIDQ GDAAIDGDND VKHHKVLVPG AVEGTHTSSD 300 DIAVEDQGKN VEQCTTYDVL GTTMKNDDAI AVDDQQVVEQ GVVDLTTIDD DPSVEEQEVV 360 EQGVVDLTTM DDDPSVEEQE VVEQGVVDLT TMDDDPSVED HEVLQQGIIG GTVDIAVQKQ 420 EKPLEQCSRA TKDEYTAKEK EMVVEQGVID PKYMDIAMED QDKLLIIDDQ DTVPMDDIVV 480 KDHDKAVVEY ASDAIVSIKD ESPVEEHDTV GSQGVIDKNG RTKDDIDVEG HGYVKELVII 540 DKWGTSSDAA ALEGQKNETE PCIGDEQIAG KDMDGVHAEA NMLEQMTGDK QGATLSDFAV 600 DKHKDVVERV RHEWGAPEND LAMDTAAYQG TRDWGIVNKE KYRAPARRYP QKPRKLNCPS 660 YMSKGTCTYG PSCHFNHPPF NAKTNDSWRP SERRDHGAAE ILELNRLGLP IREGARNCDY 720 YMRTGACRYG KNCHFNHPDH VIDARFSSPT GWEDNALETE KSSDHALTEA SHMKKASDDA 780 TLNDRSHLKK SSDGATLDDR SHLNKSSDNA TLDDRSHLKR SSDGATVDDT SYSKKSSDHD 840 TSSTSGVLPP SIFRMLLPPQ KVLPSTEGKA KKKSDWSSAS DDSDGCCSAD SSDGPLCKQE 900 EHVDYPERPG RQECPFLARY GDCKFASACK YHHPKQSKDK EQVNYPERPG RPDCPFYMRF 960 GDCKFASACN YHHPKDKYPT GLPEEPECPF YMKRGFCKFG AQCKFYHPED ANPTMQSPTD 1020 AKISVTMDKH HPSTRITPED HVPQQPQYPE RRSVTTDDHH PSIRITPEVL PQQPQYPERP 1080 GQPDCRYYMQ FGKCKYLSAC IFHHPKDRLA AMWSPSDPAH SDQIGPKIHG MPDCPFYMKS 1140 GKCQFGSLCE FRHPKDIYST TEEAFGERTG SGAYDSLTRS DNGVEQQEGS VMYPERPGEP 1200 ECAHYMRQGY CKFQMNCKYH HPGDRLSKKP TTRLATELVR TGHLSKAGTR WLPHECYQRR 1260 AALS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56050.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369202 | 0.0 | AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181184.1 | 0.0 | uncharacterized protein LOC109766829 | ||||
TrEMBL | A0A287GUG3 | 0.0 | A0A287GUG3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56050.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.1 | 4e-46 | zinc finger nuclease 3 |