PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5597.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 167aa MW: 18404.8 Da PI: 9.4294 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.4e-11 | 34 | 78 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT E++++++a ++ + W++I + +g +t q++s+ qky MLOC_5597.3 34 RESWTDPEHDKFIEALLLFDRD-WRKIEAFVG-SKTVIQIRSHAQKY 78 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-15 | 28 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.342 | 29 | 83 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 6.4E-17 | 32 | 81 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-8 | 33 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-5 | 33 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.8E-9 | 34 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.57E-7 | 36 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MAAVMESAVS GGGGGEGAEA AGRVRKPYTI TKSRESWTDP EHDKFIEALL LFDRDWRKIE 60 AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH LPPPRPKRKA AHPYPHNKAS KKAPEVDLPQ 120 QPPHIVEQGC VVPMDAPTVA TNSSADDTFP SWDNVLTQPY SPRHTQG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5597.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358284 | 0.0 | AK358284.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072L11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199314.1 | 1e-103 | protein REVEILLE 6-like isoform X3 | ||||
Swissprot | Q8H0W3 | 6e-51 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | F2D327 | 1e-118 | F2D327_HORVV; Predicted protein | ||||
STRING | MLOC_5597.8 | 1e-120 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 3e-41 | MYB_related family protein |
Publications ? help Back to Top | |||
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