PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_55957.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 225aa MW: 24771.8 Da PI: 10.3889

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_55957.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.8	1.5e-34	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd el+ +yL++ + +++l++ vi+ v+ + +PwdLp + +e ++ yfFs r+ +++ +g r++ra +sgyWkatgk+k+v+++ MLOC_55957.2 17 LPPGFRFHPTDLELLLQYLRRMALDRPLPA-AVIPVVHAAALpDPWDLPGA--SEGESAYFFSLRQAASSgRGGRRRRA-ASGYWKATGKEKPVFVQ 109 79*************************9.899999766665**43..466889*999887346666665.78**********9 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ lvg+k+ L+f++g++ +tdWvmheyrl MLOC_55957.2 110 lpvgKRLLVGVKTALAFHRGKS----RTDWVMHEYRL 142 99977778******6544....79*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-42	12	170	IPR003441	NAC domain
PROSITE profile	PS51005	40.842	17	170	IPR003441	NAC domain
Pfam	PF02365	5.9E-23	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGTRAAGEAP PATQQLLPPG FRFHPTDLEL LLQYLRRMAL DRPLPAAVIP VVHAAALPDP 60 WDLPGASEGE SAYFFSLRQA ASSGRGGRRR RAASGYWKAT GKEKPVFVQL PVGKRLLVGV 120 KTALAFHRGK SRTDWVMHEY RLAGAAEQNK RANDDSPQSS EWVVCRVSLK SRARRAAAGR 180 ETTADHHQQP SPSSTSSCVT DHACHAPDQE EVSSQQQQEQ QHPRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-30	8	170	8	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-30	8	170	8	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-30	8	170	8	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-30	8	170	8	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-30	8	170	11	168	NAC domain-containing protein 19
3swm_B	7e-30	8	170	11	168	NAC domain-containing protein 19
3swm_C	7e-30	8	170	11	168	NAC domain-containing protein 19
3swm_D	7e-30	8	170	11	168	NAC domain-containing protein 19
3swp_A	7e-30	8	170	11	168	NAC domain-containing protein 19
3swp_B	7e-30	8	170	11	168	NAC domain-containing protein 19
3swp_C	7e-30	8	170	11	168	NAC domain-containing protein 19
3swp_D	7e-30	8	170	11	168	NAC domain-containing protein 19
4dul_A	8e-30	8	170	8	165	NAC domain-containing protein 19
4dul_B	8e-30	8	170	8	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_55957.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368913	0.0	AK368913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082C12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168455.1	1e-114	NAC domain-containing protein 41-like
TrEMBL	M0X002	1e-163	M0X002_HORVV; Uncharacterized protein
STRING	MLOC_55957.2	1e-164	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	3e-31	NAC domain containing protein 41