PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_55909.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 824aa MW: 94096.5 Da PI: 7.2308 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 674 | 697 | 1 | 22 |
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r MLOC_55909.3 674 FPCDieGCDMSFSSQQDLLLHKRD 697 789999***************985 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0012 | 757 | 783 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H MLOC_55909.3 757 YECMvpGCGQTFRFVSDFSRHKRKtgH 783 788888****************99666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 9.4 | 674 | 696 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 15 | 697 | 721 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 697 | 726 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.62E-5 | 698 | 730 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 699 | 725 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 699 | 721 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-10 | 726 | 751 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0016 | 727 | 751 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.406 | 727 | 756 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 729 | 751 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.7E-11 | 737 | 780 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-10 | 752 | 780 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.24 | 757 | 783 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.72 | 757 | 788 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 759 | 783 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MHLYEECCEA KTTTSLMKPI EDNSTTITRC GRDTDTNHLA KLREQGTSYD QCSVYVDLAN 60 DPTISGVKSY SDTHLTTAKS SIEPDVLTQL KYNKDSCRMH VFCLEHALGT WTQLQKIGGA 120 NVMLLCHPEY PRAESTAKFI AEELGLKPDW KDVDFEEATD DDIRRIQLAL HDEDAEPASS 180 DWAVKMGINI YYSAKQSKSP LYSKQIPYNS IIYDVFGQEN PDNLTDYGRQ RSGVTKKRVA 240 GCWCGKVWMS NQVHPFLVRE HEEHNHAIVC SKVMLGANYH AKVHDEPSLT CNTIVICSPS 300 ERISRRKGGD SIEKSGARKK RCSANDEATL PCSSLGTNPK TINDQPRNFD DHDKHEGGKI 360 AEAPSTQQYQ HLQSMNMKSS SNKPKDDKGK CNFLDLYDED NGVDCWFNID SGDNAAIRNL 420 EDSRQKELDT VKVKSPGKLQ GNMRKSSKCK VRDDSLNGDK KVQKVNKKSI SRKQKDVDIN 480 TQFREEYKED NNWDEVPEGK DHDVEVESRP KTRSGEDDKR NNYSHELRYE DNDMDCWHDR 540 HGGENATMGN LDNSPVQRLE AAEVKSGGKL HCCKRKSSKG KAKDDYSNGD EKLQMLNIES 600 ISRKQKSDNQ FDEGCDRDNA LDSLLNDVDE ATRENCYEVR EEEMDGMEVK PRGKVQTGKR 660 KTSRCQAGDK AAKFPCDIEG CDMSFSSQQD LLLHKRDICP VKGCKKKFFC HKYLLQHRKV 720 HMDERPLNCE WKGCKKTFKW PWARTEHMRV HTGVRPYECM VPGCGQTFRF VSDFSRHKRK 780 TGHSSGRVAH PGLWVFFLVI RFFSWLSDMD FVLNMQQCFF PLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 1e-55 | 671 | 784 | 20 | 133 | Lysine-specific demethylase REF6 |
6a58_A | 1e-55 | 671 | 784 | 20 | 133 | Lysine-specific demethylase REF6 |
6a59_A | 1e-55 | 671 | 784 | 20 | 133 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 320 | RRKGGDSIEKSGARKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_55909.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201011.1 | 0.0 | lysine-specific demethylase JMJ705-like | ||||
TrEMBL | T1MUD3 | 0.0 | T1MUD3_TRIUA; Uncharacterized protein | ||||
STRING | MLOC_55909.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 5e-54 | relative of early flowering 6 |