PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5590.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 230aa    MW: 25582.4 Da    PI: 9.7001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5590.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.3e-153579147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT eE+ ++++a + +G + Wk+I + +  ++t  q++s+ qk+
      MLOC_5590.3 35 RERWTDEEHHRFLHALHIFGRD-WKSIEALVA-TKTSVQIRSHAQKH 79
                     78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-162985IPR009057Homeodomain-like
PROSITE profilePS5129417.843084IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-83385IPR009057Homeodomain-like
SMARTSM007172.6E-93482IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.8E-153482IPR006447Myb domain, plants
PfamPF002493.0E-123579IPR001005SANT/Myb domain
CDDcd001675.28E-83780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MATMVRGARM PAAARSWAAG KNKKLRKPYT ITRPRERWTD EEHHRFLHAL HIFGRDWKSI  60
EALVATKTSV QIRSHAQKHF LKAQKLGLGA CLPPPPPLHP RRATVLRQQP PAHADTDMLV  120
PSMDWACAAP ESRSPDLDAP GGGEWPFAGA LHPQDETIEL PLPPNDLRFA LVYRFVGDVF  180
ASDAAVPVEA QLQRLHLQGV DPVVVDTVST SHAHCHILSS PRWPNVLHLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5590.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3595770.0AK359577.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099F17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165295.11e-116protein REVEILLE 6-like
TrEMBLF2D6R51e-149F2D6R5_HORVV; Predicted protein
STRINGMLOC_5590.31e-168(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.19e-28MYB_related family protein