PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55767.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 432aa    MW: 45256.4 Da    PI: 4.4865
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55767.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.7e-171966249
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  +ien+  r v fskRr+g++ KA+ L v+C+aeva +++s+ g+ y +
  MLOC_55767.2 19 PIENQAARDVCFSKRRKGLFSKASQLAVMCGAEVAAVVYSPAGNAYSF 66
                  79*****************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.9091070IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-231069IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-231184IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-141232IPR002100Transcription factor, MADS-box
PfamPF003191.0E-202066IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-143247IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-144768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAGRRGPAGK GRKKVVIQPI ENQAARDVCF SKRRKGLFSK ASQLAVMCGA EVAAVVYSPA  60
GNAYSFGHPS AEDIINRFLG TGGQDGAAGA RQLGAAVDRN RLAELQQEYN KLGKELAAMD  120
ERKESWGEAM AKDRAEGSQA AAWLDAVADR RDMGDADKLA CAASLREAQV AVSARVNQVL  180
QDGRREQQAA LAARVNQVLQ AQKAPLGPAA LPPQLLAGGG GFELGGTSVN GWTEQMIQQE  240
QIMTVMPTPG FAGGVGFELG GTSANGVMEE MMSAIASGGG FEFGGTSAND GMEENFQQQQ  300
MVTAMPQLPG LLAGGGGFEL GGTSADGGMY EMMMTAMPPP LGFATGMEMM QQQEQQMMPS  360
GMMPTPPGLA AGMEMQQQQT MTEPPPLPAF AAGTEMMQQQ EMMAATPPPA PGFTAGMEMM  420
HQESGPYGSF PN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55767.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0WZ360.0M0WZ36_HORVV; Uncharacterized protein
STRINGMLOC_55767.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-20M-type_MADS family protein