PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55345.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 957aa    MW: 105594 Da    PI: 6.1238
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55345.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.92e-23148251199
                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                   f+k lt sd++++g +++p++ ae+         ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++
  MLOC_55345.6 148 FCKNLTASDTSTHGGFSVPRRAAEKLfpqlvydySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEK 241
                   89*********************999*******9555555.49************************************************..4577 PP

                   E..EEEEE-S CS
            B3  90 felvvkvfrk 99 
                    +l+v+v+r+
  MLOC_55345.6 242 SQLLVGVRRA 251
                   778*****97 PP
2Auxin_resp107.21.8e-35276358183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaas++s F+++YnPr+s+s Fvv++ +++ka++++ svGmR+ m+ ete+s +rr +Gt+vgvsd+dp+rWpnSkWr+L+
  MLOC_55345.6 276 AAHAASSGSSFTIYYNPRTSPSPFVVPMTRYNKAIYIQQSVGMRIAMMSETEESGKRRHTGTIVGVSDSDPMRWPNSKWRNLQ 358
                   79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-42139279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-38141264IPR015300DNA-binding pseudobarrel domain
CDDcd100177.59E-21147250No hitNo description
PfamPF023625.3E-21148251IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661148252IPR003340B3 DNA binding domain
SMARTSM010191.7E-22148252IPR003340B3 DNA binding domain
PfamPF065079.3E-32276358IPR010525Auxin response factor
PfamPF023093.5E-10812940IPR033389AUX/IAA domain
PROSITE profilePS5174525.301853937IPR000270PB1 domain
SuperFamilySSF542778.34E-9871932No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MAASQSQEKQ HLPAFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG  60
SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL  120
QPVNSETDVF PIQSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLVYD  180
YSMQPPNQEL IVRDLHDNMW TFRHIYRGQP KRHLLTTGWS LFVGAKRLKA GDSVLFIRDE  240
KSQLLVGVRR ATNQQTALSS SVLSTDSMHI GVLAAAAHAA SSGSSFTIYY NPRTSPSPFV  300
VPMTRYNKAI YIQQSVGMRI AMMSETEESG KRRHTGTIVG VSDSDPMRWP NSKWRNLQVE  360
WDEHEHGYGE RPERVSIWDI ETPENTIVLP SASLNSKRQC LPGYGVPGLE VASANMSPFQ  420
RAPGNPYGNL QHMPAVGSEL AMMMFLNQSG QNIGTPLSCH QSSYSSIIQN VKQNYMPPST  480
YGHPIGSIKP ESMPSNEAQQ QQLHAPKMQR GDSESCEVQP ATDSVSASEL HAAGREPRNT  540
DKYPTQSISE QNCKGEPRVK PRRSKKGSSR KTISENSELS SAPSRVCDDQ QNVLEAKLVG  600
CGTEQVNCGN NEGSSAALTH GDFAGQLQCQ QVEQNELVSP PKLESSISPD GGKSVNSFPN  660
QASFSQFFDG LDWMVQPPYY QDSNGMQSIS ASENIFSPSA NMASTINTDT LETFQNSCLS  720
DCFPNSIQDF IGSPDLHSLT FLSPEMQNLD VHNDGSNVPS TSNSYVQMSF SEDDSGNHME  780
SIQRGMNNTS CSQPQATEGF NLGMYSKLPS LKESQVLSLP EIHNSSRGTS SCSMDAAEYS  840
IDRSAKPLKP PVRTYTKVQK LGSVGRSIDV TRYRDYRELR SAIASMFGLQ GKLEHPASSD  900
WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ MSENGMQVLN DCIQADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.02238331390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55345.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699300.0AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160868.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM0WWZ90.0M0WWZ9_HORVV; Auxin response factor
STRINGMLOC_55345.60.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]