PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_55323.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 15181.9 Da PI: 4.3885 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.1 | 2.5e-09 | 9 | 36 | 28 | 55 |
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 ++r++lg+f tae+Aa+a+++a++ + g MLOC_55323.2 9 KTRIWLGTFETAEDAARAYDEAARIMCG 36 48*********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.049 | 1 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-17 | 6 | 46 | No hit | No description |
SMART | SM00380 | 8.9E-10 | 6 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-19 | 8 | 45 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-12 | 8 | 45 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-5 | 9 | 35 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MAVFFPCSKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR TNFPDNDAAP SSSFLSPALV 60 AKLHRFNVAC GPQAAQQGDK GASASSVGVE PRTSPTPFAG YTGNGASAPS AAAGWSGGFL 120 EEQYVEQMIE ELLDSNFSME ISY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_55323.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974942 | 1e-49 | EU974942.1 Zea mays clone 461426 ethylene response factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185052.1 | 4e-74 | ethylene-responsive transcription factor ERF003-like | ||||
Refseq | XP_020191629.1 | 4e-74 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 9e-28 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | M0WWU6 | 1e-94 | M0WWU6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_55323.1 | 2e-95 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 3e-12 | ERF family protein |
Publications ? help Back to Top | |||
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