PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55252.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 284aa    MW: 30168.4 Da    PI: 10.1823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55252.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05191214123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   ++C+ Cg++ s + +L+ H+ + H
  MLOC_55252.1 191 FPCKVCGEVLSKPQQLELHQAMkH 214
                   89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037191219IPR007087Zinc finger, C2H2
PROSITE patternPS000280193214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAGGARCSAL LRGFLSLFFV MFLHIGHAGC CFSPGPASQQ HEEDDAGAAS SGSSSKRRKI  60
SPLAFSPAVS SSTGVEERAG ARRRGRHVSS LATSLRCYIH RIFSSAGPRN AVPGGEEEEE  120
AVTTTVSSSP LAQSVTRRQT SVLLSTPSSP CASPFLSPMS PQSLSVTPLV PCSPLATRQL  180
SRSFAARGDL FPCKVCGEVL SKPQQLELHQ AMKHSLSELT HLDSSMNIIR MIFLAGWGLP  240
ASGAGAGAGD PPAVGRILRI HHNPRALSRF EEYRDLVRAR PARP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368841e-82BT036884.1 Zea mays full-length cDNA clone ZM_BFb0145P22 mRNA, complete cds.
GenBankBT0664351e-82BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845421e-82BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546111e-82EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153470.11e-161uncharacterized protein LOC109738783
TrEMBLA0A287PB960.0A0A287PB96_HORVV; Uncharacterized protein
STRINGMLOC_55252.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-17C2H2 family protein