PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_55239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 23615.8 Da PI: 7.2341 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 35 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael + MLOC_55239.1 35 PCGACKFLRRKCVSECIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTY 131 7***********************9989*******************************************************************99 PP DUF260 97 lkee 100 l+++ MLOC_55239.1 132 LQTH 135 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.084 | 34 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-39 | 35 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSSGVGSSTL GGCGGPSGSG SGGGGGGLGG GGGGPCGACK FLRRKCVSEC IFAPYFDSEQ 60 GAAHFAAVHK VFGASNVSKL LLQIPAHKRL DAVVTICYEA QARLRDPVYG CVAHIFALQQ 120 QVVNLQAELT YLQTHLATLE LPSPPLPAAP QLPMAMPAQF SISDLPSTTN IPTTIDLSAL 180 FEPPAQPQWA LQQHHQHQLR QPSYGAMAHR GGSSMAEGSA GSGSGDLPAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-38 | 31 | 136 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-38 | 31 | 136 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_55239.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094077 | 0.0 | FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160420.1 | 1e-109 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 2e-67 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A287PBQ6 | 1e-162 | A0A287PBQ6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_55239.1 | 1e-165 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-61 | LBD family protein |
Publications ? help Back to Top | |||
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