PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5512.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | RAV | ||||||||
Protein Properties | Length: 320aa MW: 34832.4 Da PI: 5.4698 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.9 | 4.4e-12 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f ++ Aa+a++ a+++++g MLOC_5512.2 47 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAARAYDVAALRFRG 95 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 95.6 | 3.2e-30 | 171 | 263 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++ MLOC_5512.2 171 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 263 89****************************99996666899**************************************************54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.88E-15 | 47 | 102 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.01E-12 | 47 | 101 | No hit | No description |
Pfam | PF00847 | 5.7E-7 | 47 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.06 | 48 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-25 | 48 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 48 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-38 | 167 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.59E-30 | 169 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.94E-27 | 170 | 263 | No hit | No description |
PROSITE profile | PS50863 | 14.128 | 171 | 281 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-27 | 171 | 265 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-22 | 171 | 281 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MASGKPTNPG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW 60 GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEI 120 DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV 180 GKLNRLVVPK QHAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT 240 KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYRKM NRDDEAADAA ISEENETGHV 300 AVKLFGVDIA GGGMAGSSGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-48 | 168 | 284 | 11 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5512.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191027.1 | 0.0 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
Swissprot | Q9AWS7 | 1e-121 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A287K2R1 | 0.0 | A0A287K2R1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5512.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-86 | related to ABI3/VP1 2 |