PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5512.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family RAV
Protein Properties Length: 320aa    MW: 34832.4 Da    PI: 5.4698
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5512.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.4e-124795155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s++kGV   + +grW A+I++      + r++lg+f  ++ Aa+a++ a+++++g
  MLOC_5512.1 47 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAARAYDVAALRFRG 95
                 689***9788.8*********3.....5**********99*************98 PP
2B395.63.2e-30171263185
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  f+k+ tpsdv+k++rlv+pk++ae+h         g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++
  MLOC_5512.1 171 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 263
                  89****************************99996666899**************************************************54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-1547102IPR016177DNA-binding domain
CDDcd000184.01E-1247101No hitNo description
PfamPF008475.7E-74795IPR001471AP2/ERF domain
PROSITE profilePS5103220.0648103IPR001471AP2/ERF domain
SMARTSM003801.0E-2548109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1848103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.2E-38167276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-30169266IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-27170263No hitNo description
PROSITE profilePS5086314.128171281IPR003340B3 DNA binding domain
PfamPF023622.4E-27171265IPR003340B3 DNA binding domain
SMARTSM010196.0E-22171281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MASGKPTNPG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW  60
GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEI  120
DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV  180
GKLNRLVVPK QHAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT  240
KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYRKM NRDDEAADAA ISEENETGHV  300
AVKLFGVDIA GGGMAGSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4816828411121DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191027.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS71e-121Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A287K2R10.0A0A287K2R1_HORVV; Uncharacterized protein
STRINGMLOC_5512.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-86related to ABI3/VP1 2