PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54921.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 271aa    MW: 29597.9 Da    PI: 10.651
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54921.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox375.9e-121331642556
                   --HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  25 psaeereeLAkklgLterqVkvWFqNrRakek 56 
                   + +++++ LA++l+L  rqV vWFqNrRa+ k
  MLOC_54921.1 133 MEQKQKAALARQLRLRPRQVEVWFQNRRARTK 164
                   5678999***********************98 PP
2HD-ZIP_I/II941.6e-301321992391
   HD-ZIP_I/II  23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +e+++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l
  MLOC_54921.1 132 DMEQKQKAALARQLRLRPRQVEVWFQNRRARTKLKQTEVDCESLKRCCETLTEENRRLQREVQELR-AL 199
                   6899*************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.4E-15243IPR006712HD-ZIP protein, N-terminal
SMARTSM003899.0E-770170IPR001356Homeobox domain
CDDcd000865.86E-972167No hitNo description
Gene3DG3DSA:1.10.10.608.3E-147296IPR009057Homeodomain-like
PROSITE profilePS5007112.131104166IPR001356Homeobox domain
PfamPF000462.3E-9133164IPR001356Homeobox domain
SuperFamilySSF466898.36E-10135174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-14135170IPR009057Homeodomain-like
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
SMARTSM003402.8E-22166209IPR003106Leucine zipper, homeobox-associated
PfamPF021834.2E-11166200IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPFLRGIDVN RAPATGGASE DEEPGASSPD STLSSLSGKR RAPTRSGGGE QERAGAGSDD  60
EDDSGAGGGG SRKKLRLSKD QSAVLEESFK EHSTLNPVSA LTKSTKVKKK TKIPIFLLPF  120
HPSKFALRTL MDMEQKQKAA LARQLRLRPR QVEVWFQNRR ARTKLKQTEV DCESLKRCCE  180
TLTEENRRLQ REVQELRALK LLAPPAPHLY MRAPPPATLT MCPSCERVAP SGKPAGDESR  240
AATMVTRPVP TGPWGPVPVL PVFVGRPAQR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076SRKKLRL
2158166RRARTKLKQ
3172177ESLKRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669660.0AK366966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169616.11e-146homeobox-leucine zipper protein HOX1-like
SwissprotP466024e-77HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A287FQ140.0A0A287FQ14_HORVV; Uncharacterized protein
STRINGMLOC_54921.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.12e-45homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]