PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_54900.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C3H

Protein Properties

Length: 683aa MW: 73742 Da PI: 5.3842

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_54900.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2e-07	120	147	2	25
-S---SGGGGTS....--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartG....tCkyGdrCkFaH 25 kt+lC+ff+r G C++G+ C++aH MLOC_54900.1 120 KTSLCSFFRRRGggpdGCNHGEACRYAH 147 9*************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	3.5E-11	114	155	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.73E-5	116	154	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.9E-4	118	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.953	118	150	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-5	120	147	IPR000571	Zinc finger, CCCH-type
CDD	cd00590	1.18E-4	204	269	No hit	No description
Gene3D	G3DSA:3.30.70.330	5.8E-6	207	278	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	1.92E-5	207	281	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS51687	35.23	322	683	IPR010280	(Uracil-5)-methyltransferase family
SuperFamily	SSF53335	6.81E-39	324	350	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	6.81E-39	382	485	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	6.81E-39	560	682	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	2.3E-35	569	671	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF13847	3.9E-8	613	670	IPR025714	Methyltransferase domain
CDD	cd02440	1.30E-6	619	683	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0000166	Molecular Function	nucleotide binding
GO:0008173	Molecular Function	RNA methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MKTGSPPKPF PQPSPVPAAM EGTTTPPPQE QQAPELTGEK RKREEGSPAA PAGENPAMED 60 TTQPPQQQEE AQPAGEKRKR EEDEAPEASA GDAAPASAPA GEEATAAAPT GEGARHPMSK 120 TSLCSFFRRR GGGPDGCNHG EACRYAHTEE ELRPRPDGTW DPTSDRAKKL RRVSEEDGEA 180 VEDEKRGRWG QEEVTIDDSS LDKCLVGLSR HWLTDRLKSF LDEQGISYAV AKKKKGMTVG 240 FVTFETVEQL KNAVEVLKEN RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSSDAA 300 APDEGTPGPE AGGGTKRTVR DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD 360 VTLPDWISNA KQIGGLSCKL EGILESPVID GYRNKCEFSV GHSLAGKKTV GFMLGNFREG 420 VTAVEEPVDC PNVSALSCKY AMMFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV 480 VAQDTQTQIS EVMIIIQVCS TGVDEAQMKD EFAKLTKTLV QGAATCLPPL PLTTIVVQDH 540 TGISNVAPAD CPLIPLLVPE VDQSEEGAVD KTRIHDHISN LRFSLSPTAF FQVNTLAAER 600 LYTLAGDWAN LNSDTLLFDV CCGTGTIGLT LAHRVGMVVG IEMNESAVVD AQRNALINGI 660 KNCRFVCGKV RLTCLMNDSF TLV

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MKTGSPPKPF PQPSPVPAAM EGTTTPPPQE QQAPELTGEK RKREEGSPAA PAGENPAMED  60
TTQPPQQQEE AQPAGEKRKR EEDEAPEASA GDAAPASAPA GEEATAAAPT GEGARHPMSK  120
TSLCSFFRRR GGGPDGCNHG EACRYAHTEE ELRPRPDGTW DPTSDRAKKL RRVSEEDGEA  180
VEDEKRGRWG QEEVTIDDSS LDKCLVGLSR HWLTDRLKSF LDEQGISYAV AKKKKGMTVG  240
FVTFETVEQL KNAVEVLKEN RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSSDAA  300
APDEGTPGPE AGGGTKRTVR DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD  360
VTLPDWISNA KQIGGLSCKL EGILESPVID GYRNKCEFSV GHSLAGKKTV GFMLGNFREG  420
VTAVEEPVDC PNVSALSCKY AMMFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV  480
VAQDTQTQIS EVMIIIQVCS TGVDEAQMKD EFAKLTKTLV QGAATCLPPL PLTTIVVQDH  540
TGISNVAPAD CPLIPLLVPE VDQSEEGAVD KTRIHDHISN LRFSLSPTAF FQVNTLAAER  600
LYTLAGDWAN LNSDTLLFDV CCGTGTIGLT LAHRVGMVVG IEMNESAVVD AQRNALINGI  660
KNCRFVCGKV RLTCLMNDSF TLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5xj1_A	3e-16	319	667	76	358	Uncharacterized RNA methyltransferase SP_1029
5zq0_A	3e-16	319	667	77	359	Uncharacterized RNA methyltransferase SP_1029
5zq1_A	3e-16	319	667	76	358	Uncharacterized RNA methyltransferase SP_1029
5zth_A	3e-16	319	667	77	359	Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_54900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174158.1	0.0	zinc finger CCCH domain-containing protein 24
Swissprot	Q8L7S3	0.0	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	M0WUY2	0.0	M0WUY2_HORVV; Uncharacterized protein
STRING	MLOC_54900.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8493	31	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]