PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_54886.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GATA | ||||||||
Protein Properties | Length: 181aa MW: 19687.6 Da PI: 9.8024 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.2 | 1.4e-20 | 43 | 77 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++ MLOC_54886.3 43 CADCNTTKTPLWRGGPNGPKSLCNACGIRYRKRRR 77 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.1E-17 | 37 | 89 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.927 | 37 | 73 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-13 | 38 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-16 | 41 | 77 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.42E-16 | 42 | 92 | No hit | No description |
Pfam | PF00320 | 2.3E-18 | 43 | 77 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 43 | 68 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSPAEMGSDK MKMKMKMIEV EVQAAAADPD DCTASGAGDP KSCADCNTTK TPLWRGGPNG 60 PKSLCNACGI RYRKRRRVAM GLDPEAKRKP KRDDAINSAA AAAEASTQQQ EEVTKPTDDD 120 KAVSTNKTTK THTVELHMVG FGKDAVLKQR RRMRRRKPSC LGEEERAAML LMALSSGVIY 180 A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 76 | RKRRR |
2 | 73 | 77 | KRRRV |
3 | 148 | 154 | QRRRMRR |
4 | 149 | 156 | RRRMRRRK |
5 | 150 | 155 | RRMRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_54886.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364126 | 0.0 | AK364126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021P18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158673.1 | 2e-64 | GATA transcription factor 15-like | ||||
TrEMBL | F2DJQ8 | 1e-130 | F2DJQ8_HORVV; Predicted protein | ||||
STRING | MLOC_54886.3 | 1e-131 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16870.1 | 6e-24 | GATA transcription factor 17 |