PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54810.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 316aa    MW: 36479.3 Da    PI: 10.1496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54810.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-142373152098
                   HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
            B3  20 kkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                    kfa +h+  k++++ l l+ e   rsW  kl  + +s++    kGW +F+++n+L+egD ++Fkl+++ +   ++v ++r
  MLOC_54810.1 237 EKFAVSHDRGKHSGIYLLLRLEGKiRSWPTKL--QHSSRGSKVLKGWPSFARDNRLREGDLCLFKLMKNeEPLMMMVYIVR 315
                   6899999666777766666665548*******..66666644445**********************98899999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-119103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1110104IPR015300DNA-binding pseudobarrel domain
CDDcd100179.78E-81599No hitNo description
PROSITE profilePS508636.93616114IPR003340B3 DNA binding domain
SMARTSM010190.2417117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-13197313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-13198315IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-11202315No hitNo description
SMARTSM010193.5E-4210315IPR003340B3 DNA binding domain
PfamPF023622.9E-12234316IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293262316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKINAVVKKI KPKFKMLVVQ MKKSNIRRYT LEIPKDYALK HFPCEDTSIT LQLPRKNKNW  60
KCKLYVRPSG VAGAGRCSLY VGKFVHDTHV REGDIYLFEP MTNVKQRRYV MTAHPLHEAC  120
SDHSAGGRTN IGSNHRRTCA KMGDVKDKTP TDGEEYSSKH EELEVSQDSE ETLFMLDDGA  180
YLTPAQEMKS LEKVEEIKFK PPFYVVIMSK STVCQRGSQN NPMLRFGSQY TAKYFGEKFA  240
VSHDRGKHSG IYLLLRLEGK IRSWPTKLQH SSRGSKVLKG WPSFARDNRL REGDLCLFKL  300
MKNEEPLMMM VYIVRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198704.11e-134B3 domain-containing protein Os03g0620400-like
TrEMBLA0A287MJP00.0A0A287MJP0_HORVV; Uncharacterized protein
STRINGMLOC_54810.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-06related to vernalization1 1