PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_54725.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 937aa MW: 101975 Da PI: 6.9448

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_54725.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	39.9	9.1e-13	665	697	2	36
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaC 36 +e l+cprC+stntkf +nn sl+qP +fC++C MLOC_54725.2 665 PEPGLNCPRCNSTNTKF--FNNNSLTQPHHFCREC 697 567899********8..9************* PP
2	zf-Dof	90.1	1.8e-28	772	824	2	54
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54 +e lkcprCdstntkfCy+nnysl+qPr+fC++C r Wt+GGalr v vG+ MLOC_54725.2 772 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCHTCGRSWTRGGALRSVRVGSR 824 56789**********************************************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07887	2.6E-18	7	126	IPR012416	CALMODULIN-BINDING PROTEIN60
Pfam	PF07887	2.5E-38	431	585	IPR012416	CALMODULIN-BINDING PROTEIN60
Pfam	PF02701	6.9E-11	669	697	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-29	758	830	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-24	776	824	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.636	776	830	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	778	814	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006950	Biological Process	response to stress
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MYDGGNRIAP DHSLASARVD LVLIEGSFNE PKRGSWSKEE FEESIIKPRK GITRLVKNGT 60 FDLTDGSCDH EGAIIMDNSQ QREVKLGVMI AVHTEVRVLE GVSNPFKVQE GKTKKTASSK 120 KRKKPSPVPT RNLVQTTSTH TAQHGQSPIT PDEQHNLPPP VIQDVLQKSD RGKHTEFLTD 180 DTAEDNRLNY PLAIVPQIVE GNGLNGNGQQ LSQHIPMQIL WQPASAHSMR NGQNYSLPQT 240 GIQNPSQAAG YCPAYQPLLA CEDQYTSFSN ASSQLAFPNL SEYMTLNDIR QWTSIPEGEI 300 SVEHVHPLIV PSQIQETYGS FRCGQVLLQW DKPHVEPKEH WNFLDELMPL HSTQSRFYGE 360 SFPTTSLMDK AHKLLASNSS GDSVLKMITI ITSRATQAPQ RRGILIRPIE PYDSDADIFR 420 PPVKKQRNAK YQLRFVNSVC NDYYTQEQIK SENGNLLKVA LYDENNLVVT SGPLSSASVE 480 VVLLHGDFNA DGQDYWTSEE FSSCLVHPQS VEEPPALVGD CALALTDGET DLGNISFQIS 540 SFHARTGKFK MGVEIKNVRE ASAQEGITSP FLVRVRQGEE SSRHRITSPE ALLRVRMELP 600 KQVCGPLQCD ARENVCASPD QSSPERNDLV ASRAEDDDSM VQSGSGVLLF PAPRPPSEQV 660 QVPQPEPGLN CPRCNSTNTK FFNNNSLTQP HHFCRECGLG LGATATLGMT AVPAADCDIA 720 GRAAGAPAPA AYVAAAAAMS TSTKPSTTAC GTSALMSMSM VERARLAKVP QPEPGLKCPR 780 CDSTNTKFCY FNNYSLTQPR HFCHTCGRSW TRGGALRSVR VGSRYSCHAK RSTKSKASAR 840 EPAAAAGTAS SALTATTPNT TSCTGTAPPG FNQYSMFCTK SASPHSNWFA DNFDPASPGF 900 GSPARLLFPQ QVLKGVDIGL QSGSGGDCED GASSTTK

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MYDGGNRIAP DHSLASARVD LVLIEGSFNE PKRGSWSKEE FEESIIKPRK GITRLVKNGT  60
FDLTDGSCDH EGAIIMDNSQ QREVKLGVMI AVHTEVRVLE GVSNPFKVQE GKTKKTASSK  120
KRKKPSPVPT RNLVQTTSTH TAQHGQSPIT PDEQHNLPPP VIQDVLQKSD RGKHTEFLTD  180
DTAEDNRLNY PLAIVPQIVE GNGLNGNGQQ LSQHIPMQIL WQPASAHSMR NGQNYSLPQT  240
GIQNPSQAAG YCPAYQPLLA CEDQYTSFSN ASSQLAFPNL SEYMTLNDIR QWTSIPEGEI  300
SVEHVHPLIV PSQIQETYGS FRCGQVLLQW DKPHVEPKEH WNFLDELMPL HSTQSRFYGE  360
SFPTTSLMDK AHKLLASNSS GDSVLKMITI ITSRATQAPQ RRGILIRPIE PYDSDADIFR  420
PPVKKQRNAK YQLRFVNSVC NDYYTQEQIK SENGNLLKVA LYDENNLVVT SGPLSSASVE  480
VVLLHGDFNA DGQDYWTSEE FSSCLVHPQS VEEPPALVGD CALALTDGET DLGNISFQIS  540
SFHARTGKFK MGVEIKNVRE ASAQEGITSP FLVRVRQGEE SSRHRITSPE ALLRVRMELP  600
KQVCGPLQCD ARENVCASPD QSSPERNDLV ASRAEDDDSM VQSGSGVLLF PAPRPPSEQV  660
QVPQPEPGLN CPRCNSTNTK FFNNNSLTQP HHFCRECGLG LGATATLGMT AVPAADCDIA  720
GRAAGAPAPA AYVAAAAAMS TSTKPSTTAC GTSALMSMSM VERARLAKVP QPEPGLKCPR  780
CDSTNTKFCY FNNYSLTQPR HFCHTCGRSW TRGGALRSVR VGSRYSCHAK RSTKSKASAR  840
EPAAAAGTAS SALTATTPNT TSCTGTAPPG FNQYSMFCTK SASPHSNWFA DNFDPASPGF  900
GSPARLLFPQ QVLKGVDIGL QSGSGGDCED GASSTTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	123	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_54725.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369911	0.0	AK369911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100O23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A446Q8W7	0.0	A0A446Q8W7_TRITD; Uncharacterized protein
STRING	MLOC_54725.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15374	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	4e-33	OBF-binding protein 3