PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54725.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 721aa    MW: 78165.6 Da    PI: 6.8291
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54725.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof40.36.7e-13449481236
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaC 36 
                   +e  l+cprC+stntkf  +nn sl+qP +fC++C
  MLOC_54725.1 449 PEPGLNCPRCNSTNTKF--FNNNSLTQPHHFCREC 481
                   567899**********8..9*************** PP
2zf-Dof90.61.3e-28556608254
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54 
                   +e  lkcprCdstntkfCy+nnysl+qPr+fC++C r Wt+GGalr v vG+ 
  MLOC_54725.1 556 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCHTCGRSWTRGGALRSVRVGSR 608
                   56789**********************************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.6E-38215369IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF027015.1E-11453481IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-28542614IPR003851Zinc finger, Dof-type
PfamPF027011.2E-24560608IPR003851Zinc finger, Dof-type
PROSITE profilePS5088423.636560614IPR003851Zinc finger, Dof-type
PROSITE patternPS013610562598IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MQILWQPASA HSMRNGQNYS LPQTGIQNPS QAAGYCPAYQ PLLACEDQYT SFSNASSQLA  60
FPNLSEYMTL NDIRQWTSIP EGEISVEHVH PLIVPSQIQE TYGSFRCGQV LLQWDKPHVE  120
PKEHWNFLDE LMPLHSTQSR FYGESFPTTS LMDKAHKLLA SNSSGDSVLK MITIITSRAT  180
QAPQRRGILI RPIEPYDSDA DIFRPPVKKQ RNAKYQLRFV NSVCNDYYTQ EQIKSENGNL  240
LKVALYDENN LVVTSGPLSS ASVEVVLLHG DFNADGQDYW TSEEFSSCLV HPQSVEEPPA  300
LVGDCALALT DGETDLGNIS FQISSFHART GKFKMGVEIK NVREASAQEG ITSPFLVRVR  360
QGEESSRHRI TSPEALLRVR MELPKQVCGP LQCDARENVC ASPDQSSPER NDLVASRAED  420
DDSMVQSGSG VLLFPAPRPP SEQVQVPQPE PGLNCPRCNS TNTKFFNNNS LTQPHHFCRE  480
CGLGLGATAT LGMTAVPAAD CDIAGRAAGA PAPAAYVAAA AAMSTSTKPS TTACGTSALM  540
SMSMVERARL AKVPQPEPGL KCPRCDSTNT KFCYFNNYSL TQPRHFCHTC GRSWTRGGAL  600
RSVRVGSRYS CHAKRSTKSK ASAREPAAAA GTASSALTAT TPNTTSCTGT APPGFNQYSM  660
FCTKSASPHS NWFADNFDPA SPGFGSPARL LFPQQVLKGV DIGLQSGSGG DCEDGASSTT  720
K
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699110.0AK369911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100O23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A446Q8W70.0A0A446Q8W7_TRITD; Uncharacterized protein
STRINGMLOC_54725.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-33OBF-binding protein 3