PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_54674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 23681.7 Da PI: 8.5033 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 142 | 161 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ Cgk+F++ L H MLOC_54674.1 142 HECNVCGKTFPTGQALGGHK 161 78*********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.7E-13 | 83 | 108 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.12E-10 | 84 | 106 | No hit | No description |
SMART | SM00355 | 0.18 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.12E-10 | 137 | 164 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 138 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.8E-14 | 141 | 166 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.029 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.305 | 142 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAVEAVLEAA ATVPSPPPRK EMAASSSSSS GEEASALLQQ AEGWSRRKRS RRQRALHPSE 60 EEYLALCLVM LAHGHRDGAP AAAHGCSVCG KVFASYQALG GHKASHRKPA GAEDRKPQAA 120 VAAASSSGSG DAEAGAGGGK VHECNVCGKT FPTGQALGGH KRCHYDGTIG SAAAGPTHKL 180 AAKASATPAS RGFDLNLPAL PDIPERCAVT EDGEEVLSPV SFKKPRLMLT A |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_54674.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU408222 | 0.0 | EU408222.1 Triticum aestivum Q-type C2H2 zinc finger protein (ZFP22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150049.1 | 1e-107 | zinc finger protein 1-like | ||||
TrEMBL | A0A3B6MLT2 | 1e-106 | A0A3B6MLT2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453JV17 | 1e-106 | A0A453JV17_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_54674.1 | 1e-165 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-37 | salt tolerance zinc finger |