PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54308.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 355aa    MW: 37953.1 Da    PI: 7.488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54308.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05169188120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++C  C+k+F+r  n++ H+
  MLOC_54308.1 169 FSCAVCNKTFNRFNNMQMHM 188
                   89*****************9 PP
2zf-C2H213.70.00018260282123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y C  Cgk+F  + + ++H +++
  MLOC_54308.1 260 YACRRCGKRFAVRGDWRTHEKNC 282
                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-5164190No hitNo description
PROSITE profilePS5015710.055169196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-5169188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SMARTSM00355220223255IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.88E-6244280No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6246280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558260280IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MHSYRAMHPH PHPYHTAPAP PTKMASGGHG GATEDDDQSM LLLSLWPPGH HHDAAASSSA  60
CSSHSVATAA HSTASSPWFN PSHVYNGCGV GGGGGSGSGG FLFHEQGRNV SVSLSIAPPS  120
PCGANLAPSG GSFAAPLAPP SAASAGGNQV PSQYWIPSAA EILVGSTQFS CAVCNKTFNR  180
FNNMQMHMWG HGSQYRKGSE SLRGAVTVGT AAPPPSLLRL PCYCCAEGCR NNIDHPRARP  240
LKDFRTLQTH YRRKHGARPY ACRRCGKRFA VRGDWRTHEK NCGKLWFCVC GSDFKHKRSL  300
KDHVRSFGGG HAPHIVESVA VDEDEDEDDE HDDGDQLHLY DENGNAGDGS DMVLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732990.0AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172443.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-98ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLF2EAX40.0F2EAX4_HORVV; Predicted protein
STRINGMLOC_54308.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.18e-98C2H2-like zinc finger protein