PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53943.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 460aa    MW: 49341.7 Da    PI: 9.9356
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53943.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31280333255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MLOC_53943.2 280 PRIRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 333
                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-28277333IPR009057Homeodomain-like
SuperFamilySSF466894.3E-15278333IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-23280334IPR006447Myb domain, plants
PfamPF002491.7E-6283332IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MVYGRKDQSI SSILGRPPPS NKLHSPLFHT AHPNRHSCPS PFQVPISLLL LPSSPSSSAP  60
PPTSLPARNL PSSAPQFRPD PFSISLASRK STPAADITPL ALRKLREGSM ELFPSHPDLQ  120
LQLQISPPPA TKPMDLGFWK RALDTTAAAT TAASAAATFA PPSIARTYPS LPAAAGGGFH  180
AGHYGAADGH LGGVQFLQHT QPILHEVQDL AAMKPIRGIP VYNTSHQSLP FLQSQLHHHN  240
HHHQHCYDAI GGAAGGPRSP GKVGALRLAA PPAKRNSRAP RIRWTTSLHA RFVHAVELLG  300
GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTIKTADHK SAAASYGQAK TIIDIPDDSS  360
FEIANTTSGS ESSVQQSNLD GNEHGSNMCT LWSNNSSSRG AWSFHGKSRS DANPGDIKSF  420
EDVQSQCPND AADLMSSPFR LSELVVGAKK PNLDFTLGRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-16281335357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-16281335357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-16281335357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-16281335357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-16281335458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53943.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0691439e-69BT069143.1 Zea mays full-length cDNA clone ZM_BFb0209N04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156179.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A453PBP50.0A0A453PBP5_AEGTS; Uncharacterized protein
STRINGMLOC_53943.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-41G2-like family protein