PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_53882.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 767aa MW: 88662.2 Da PI: 7.4642

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_53882.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.1e-20	132	213	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA +GF ++++++++ k++ C+++gk+++ ++ +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l+p MLOC_53882.5 132 FYSTYALLTGFVAKRNSNYRR------QKYHIECNRSGKPTPPRNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPLCP 213 9**************9998......5789*******9998.9******************.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-17	132	213	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-22	353	437	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.506	636	672	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MSSASELSKE PGGKQSMTEK RPQPTGDNYE ELSSDSIEKN TDGILVDDAD KETNSVDHSL 60 QQAEEQNQLH DNVENNEMVN RNPSESDSDS SSGSDSDSEL GKYFYPKFEE LEAARKPEPG 120 MKFQTLEDAN GFYSTYALLT GFVAKRNSNY RRQKYHIECN RSGKPTPPRN PNRKRKINSF 180 ERTNCQAKVI VKLTKGQWEF ATVRNEHNHP LCPNLSLARF FLSQKHMSSE EKSFLKVLQQ 240 SKIPPNKILR IFRRMRSSFG NISFKKQDPV SSVRSSSENI PSKKKDPISL QCTEQRKTEN 300 SDVESTLKHF KELELRNPSF FYIKQTDEDN IIRSIFWTDA RSRMDYDIFG DFISVDTTYT 360 TNRHNLPVAT IIGINNHGRT LLLGCALLRD GKAETFKWMF QTILQVMGGK IPGSIITNQD 420 EPLGRAIAEV LPQVRLRFWK CDVMGKAHER IAAFMAARGN IKLELDSLVD NSLTEMEFEE 480 GWSSLIERYD ASKNEYLQFM WRIRKIWAPV YFRQDFYPFA ESLGRGEGMN IVLFRNYVLP 540 KDRIEKFIER YEEIQKATLK TDNEDRRQAG NVPSCFSLQP IEKHASTIYT RQIFLKVQRE 600 LLHSTAFDVH VVKKGSVYRL ERVFTYENPE FDRNAFEVFV DPVSNTFLCQ CAKFARDRIL 660 CCHIFRLFTQ LGINEIPAQY IVPRWTDKFK EDKAKQYTEK CLEKADSTAR YEMLMSKMAD 720 LSKKICSDGT KCNTFMLEFD SIQEKLLATE GENPCNDDNS MEITTTS

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MSSASELSKE PGGKQSMTEK RPQPTGDNYE ELSSDSIEKN TDGILVDDAD KETNSVDHSL  60
QQAEEQNQLH DNVENNEMVN RNPSESDSDS SSGSDSDSEL GKYFYPKFEE LEAARKPEPG  120
MKFQTLEDAN GFYSTYALLT GFVAKRNSNY RRQKYHIECN RSGKPTPPRN PNRKRKINSF  180
ERTNCQAKVI VKLTKGQWEF ATVRNEHNHP LCPNLSLARF FLSQKHMSSE EKSFLKVLQQ  240
SKIPPNKILR IFRRMRSSFG NISFKKQDPV SSVRSSSENI PSKKKDPISL QCTEQRKTEN  300
SDVESTLKHF KELELRNPSF FYIKQTDEDN IIRSIFWTDA RSRMDYDIFG DFISVDTTYT  360
TNRHNLPVAT IIGINNHGRT LLLGCALLRD GKAETFKWMF QTILQVMGGK IPGSIITNQD  420
EPLGRAIAEV LPQVRLRFWK CDVMGKAHER IAAFMAARGN IKLELDSLVD NSLTEMEFEE  480
GWSSLIERYD ASKNEYLQFM WRIRKIWAPV YFRQDFYPFA ESLGRGEGMN IVLFRNYVLP  540
KDRIEKFIER YEEIQKATLK TDNEDRRQAG NVPSCFSLQP IEKHASTIYT RQIFLKVQRE  600
LLHSTAFDVH VVKKGSVYRL ERVFTYENPE FDRNAFEVFV DPVSNTFLCQ CAKFARDRIL  660
CCHIFRLFTQ LGINEIPAQY IVPRWTDKFK EDKAKQYTEK CLEKADSTAR YEMLMSKMAD  720
LSKKICSDGT KCNTFMLEFD SIQEKLLATE GENPCNDDNS MEITTTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_53882.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188688.1	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	M0WQN9	0.0	M0WQN9_HORVV; Uncharacterized protein
STRING	MLOC_53882.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-71	FAR1 family protein