PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53882.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 825aa    MW: 94964.5 Da    PI: 7.6506
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53882.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.81e-19190271291
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   fY++YA  +GF  ++++++++       k++  C+++gk+++ ++  +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l+p
  MLOC_53882.4 190 FYSTYALLTGFVAKRNSNYRR------QKYHIECNRSGKPTPPRNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPLCP 271
                   9****************9998......5789***********9998.9**********************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-17190271IPR004330FAR1 DNA binding domain
PfamPF105516.5E-22411495IPR018289MULE transposase domain
PROSITE profilePS509668.506694730IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MELLQFIMTG MVTELDKQGA EIAGNTTKKR GRHIVAGDEG SPVPELHRKK ASKNAVETMS  60
SASELSKEPG GKQSMTEKRP QPTGDNYEEL SSDSIEKNTD GILVDDADKE TNSVDHSLQQ  120
AEEQNQLHDN VENNEMVNRN PSESDSDSSS GSDSDSELGK YFYPKFEELE AARKPEPGMK  180
FQTLEDANGF YSTYALLTGF VAKRNSNYRR QKYHIECNRS GKPTPPRNPN RKRKINSFER  240
TNCQAKVIVK LTKGQWEFAT VRNEHNHPLC PNLSLARFFL SQKHMSSEEK SFLKVLQQSK  300
IPPNKILRIF RRMRSSFGNI SFKKQDPVSS VRSSSENIPS KKKDPISLQC TEQRKTENSD  360
VESTLKHFKE LELRNPSFFY IKQTDEDNII RSIFWTDARS RMDYDIFGDF ISVDTTYTTN  420
RHNLPVATII GINNHGRTLL LGCALLRDGK AETFKWMFQT ILQVMGGKIP GSIITNQDEP  480
LGRAIAEVLP QVRLRFWKCD VMGKAHERIA AFMAARGNIK LELDSLVDNS LTEMEFEEGW  540
SSLIERYDAS KNEYLQFMWR IRKIWAPVYF RQDFYPFAES LGRGEGMNIV LFRNYVLPKD  600
RIEKFIERYE EIQKATLKTD NEDRRQAGNV PSCFSLQPIE KHASTIYTRQ IFLKVQRELL  660
HSTAFDVHVV KKGSVYRLER VFTYENPEFD RNAFEVFVDP VSNTFLCQCA KFARDRILCC  720
HIFRLFTQLG INEIPAQYIV PRWTDKFKED KAKQYTEKCL EKADSTARYE MLMSKMADLS  780
KKICSDGTKC NTFMLEFDSI QEKLLATEGE NPCNDDNSME ITTTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53882.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188688.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLM0WQN90.0M0WQN9_HORVV; Uncharacterized protein
STRINGMLOC_53882.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-71FAR1 family protein