PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_53882.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 818aa MW: 94089.4 Da PI: 7.7966

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_53882.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	9.9e-20	183	264	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA +GF ++++++++ k++ C+++gk+++ ++ +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l+p MLOC_53882.3 183 FYSTYALLTGFVAKRNSNYRR------QKYHIECNRSGKPTPPRNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPLCP 264 9**************9998......5789*******9998.9******************.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-17	183	264	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-22	404	488	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.506	687	723	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MTGMVTELDK QGAEIAGNTT KKRGRHIVAG DEGSPVPELH RKKASKNAVE TMSSASELSK 60 EPGGKQSMTE KRPQPTGDNY EELSSDSIEK NTDGILVDDA DKETNSVDHS LQQAEEQNQL 120 HDNVENNEMV NRNPSESDSD SSSGSDSDSE LGKYFYPKFE ELEAARKPEP GMKFQTLEDA 180 NGFYSTYALL TGFVAKRNSN YRRQKYHIEC NRSGKPTPPR NPNRKRKINS FERTNCQAKV 240 IVKLTKGQWE FATVRNEHNH PLCPNLSLAR FFLSQKHMSS EEKSFLKVLQ QSKIPPNKIL 300 RIFRRMRSSF GNISFKKQDP VSSVRSSSEN IPSKKKDPIS LQCTEQRKTE NSDVESTLKH 360 FKELELRNPS FFYIKQTDED NIIRSIFWTD ARSRMDYDIF GDFISVDTTY TTNRHNLPVA 420 TIIGINNHGR TLLLGCALLR DGKAETFKWM FQTILQVMGG KIPGSIITNQ DEPLGRAIAE 480 VLPQVRLRFW KCDVMGKAHE RIAAFMAARG NIKLELDSLV DNSLTEMEFE EGWSSLIERY 540 DASKNEYLQF MWRIRKIWAP VYFRQDFYPF AESLGRGEGM NIVLFRNYVL PKDRIEKFIE 600 RYEEIQKATL KTDNEDRRQA GNVPSCFSLQ PIEKHASTIY TRQIFLKVQR ELLHSTAFDV 660 HVVKKGSVYR LERVFTYENP EFDRNAFEVF VDPVSNTFLC QCAKFARDRI LCCHIFRLFT 720 QLGINEIPAQ YIVPRWTDKF KEDKAKQYTE KCLEKADSTA RYEMLMSKMA DLSKKICSDG 780 TKCNTFMLEF DSIQEKLLAT EGENPCNDDN SMEITTTS

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MTGMVTELDK QGAEIAGNTT KKRGRHIVAG DEGSPVPELH RKKASKNAVE TMSSASELSK  60
EPGGKQSMTE KRPQPTGDNY EELSSDSIEK NTDGILVDDA DKETNSVDHS LQQAEEQNQL  120
HDNVENNEMV NRNPSESDSD SSSGSDSDSE LGKYFYPKFE ELEAARKPEP GMKFQTLEDA  180
NGFYSTYALL TGFVAKRNSN YRRQKYHIEC NRSGKPTPPR NPNRKRKINS FERTNCQAKV  240
IVKLTKGQWE FATVRNEHNH PLCPNLSLAR FFLSQKHMSS EEKSFLKVLQ QSKIPPNKIL  300
RIFRRMRSSF GNISFKKQDP VSSVRSSSEN IPSKKKDPIS LQCTEQRKTE NSDVESTLKH  360
FKELELRNPS FFYIKQTDED NIIRSIFWTD ARSRMDYDIF GDFISVDTTY TTNRHNLPVA  420
TIIGINNHGR TLLLGCALLR DGKAETFKWM FQTILQVMGG KIPGSIITNQ DEPLGRAIAE  480
VLPQVRLRFW KCDVMGKAHE RIAAFMAARG NIKLELDSLV DNSLTEMEFE EGWSSLIERY  540
DASKNEYLQF MWRIRKIWAP VYFRQDFYPF AESLGRGEGM NIVLFRNYVL PKDRIEKFIE  600
RYEEIQKATL KTDNEDRRQA GNVPSCFSLQ PIEKHASTIY TRQIFLKVQR ELLHSTAFDV  660
HVVKKGSVYR LERVFTYENP EFDRNAFEVF VDPVSNTFLC QCAKFARDRI LCCHIFRLFT  720
QLGINEIPAQ YIVPRWTDKF KEDKAKQYTE KCLEKADSTA RYEMLMSKMA DLSKKICSDG  780
TKCNTFMLEF DSIQEKLLAT EGENPCNDDN SMEITTTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_53882.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188688.1	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	M0WQN9	0.0	M0WQN9_HORVV; Uncharacterized protein
STRING	MLOC_53882.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-71	FAR1 family protein