PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53882.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 815aa    MW: 93800 Da    PI: 7.7966
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53882.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.89.9e-20180261291
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   fY++YA  +GF  ++++++++       k++  C+++gk+++ ++  +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l+p
  MLOC_53882.2 180 FYSTYALLTGFVAKRNSNYRR------QKYHIECNRSGKPTPPRNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPLCP 261
                   9****************9998......5789***********9998.9**********************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-17180261IPR004330FAR1 DNA binding domain
PfamPF105516.4E-22401485IPR018289MULE transposase domain
PROSITE profilePS509668.506684720IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MVTELDKQGA EIAGNTTKKR GRHIVAGDEG SPVPELHRKK ASKNAVETMS SASELSKEPG  60
GKQSMTEKRP QPTGDNYEEL SSDSIEKNTD GILVDDADKE TNSVDHSLQQ AEEQNQLHDN  120
VENNEMVNRN PSESDSDSSS GSDSDSELGK YFYPKFEELE AARKPEPGMK FQTLEDANGF  180
YSTYALLTGF VAKRNSNYRR QKYHIECNRS GKPTPPRNPN RKRKINSFER TNCQAKVIVK  240
LTKGQWEFAT VRNEHNHPLC PNLSLARFFL SQKHMSSEEK SFLKVLQQSK IPPNKILRIF  300
RRMRSSFGNI SFKKQDPVSS VRSSSENIPS KKKDPISLQC TEQRKTENSD VESTLKHFKE  360
LELRNPSFFY IKQTDEDNII RSIFWTDARS RMDYDIFGDF ISVDTTYTTN RHNLPVATII  420
GINNHGRTLL LGCALLRDGK AETFKWMFQT ILQVMGGKIP GSIITNQDEP LGRAIAEVLP  480
QVRLRFWKCD VMGKAHERIA AFMAARGNIK LELDSLVDNS LTEMEFEEGW SSLIERYDAS  540
KNEYLQFMWR IRKIWAPVYF RQDFYPFAES LGRGEGMNIV LFRNYVLPKD RIEKFIERYE  600
EIQKATLKTD NEDRRQAGNV PSCFSLQPIE KHASTIYTRQ IFLKVQRELL HSTAFDVHVV  660
KKGSVYRLER VFTYENPEFD RNAFEVFVDP VSNTFLCQCA KFARDRILCC HIFRLFTQLG  720
INEIPAQYIV PRWTDKFKED KAKQYTEKCL EKADSTARYE MLMSKMADLS KKICSDGTKC  780
NTFMLEFDSI QEKLLATEGE NPCNDDNSME ITTTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53882.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188688.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLM0WQN70.0M0WQN7_HORVV; Uncharacterized protein
STRINGMLOC_53882.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-71FAR1 family protein