PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 818aa MW: 94089.4 Da PI: 7.7966 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.8 | 9.9e-20 | 183 | 264 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA +GF ++++++++ k++ C+++gk+++ ++ +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l+p MLOC_53882.1 183 FYSTYALLTGFVAKRNSNYRR------QKYHIECNRSGKPTPPRNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPLCP 264 9****************9998......5789***********9998.9**********************.9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-17 | 183 | 264 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.4E-22 | 404 | 488 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.506 | 687 | 723 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MTGMVTELDK QGAEIAGNTT KKRGRHIVAG DEGSPVPELH RKKASKNAVE TMSSASELSK 60 EPGGKQSMTE KRPQPTGDNY EELSSDSIEK NTDGILVDDA DKETNSVDHS LQQAEEQNQL 120 HDNVENNEMV NRNPSESDSD SSSGSDSDSE LGKYFYPKFE ELEAARKPEP GMKFQTLEDA 180 NGFYSTYALL TGFVAKRNSN YRRQKYHIEC NRSGKPTPPR NPNRKRKINS FERTNCQAKV 240 IVKLTKGQWE FATVRNEHNH PLCPNLSLAR FFLSQKHMSS EEKSFLKVLQ QSKIPPNKIL 300 RIFRRMRSSF GNISFKKQDP VSSVRSSSEN IPSKKKDPIS LQCTEQRKTE NSDVESTLKH 360 FKELELRNPS FFYIKQTDED NIIRSIFWTD ARSRMDYDIF GDFISVDTTY TTNRHNLPVA 420 TIIGINNHGR TLLLGCALLR DGKAETFKWM FQTILQVMGG KIPGSIITNQ DEPLGRAIAE 480 VLPQVRLRFW KCDVMGKAHE RIAAFMAARG NIKLELDSLV DNSLTEMEFE EGWSSLIERY 540 DASKNEYLQF MWRIRKIWAP VYFRQDFYPF AESLGRGEGM NIVLFRNYVL PKDRIEKFIE 600 RYEEIQKATL KTDNEDRRQA GNVPSCFSLQ PIEKHASTIY TRQIFLKVQR ELLHSTAFDV 660 HVVKKGSVYR LERVFTYENP EFDRNAFEVF VDPVSNTFLC QCAKFARDRI LCCHIFRLFT 720 QLGINEIPAQ YIVPRWTDKF KEDKAKQYTE KCLEKADSTA RYEMLMSKMA DLSKKICSDG 780 TKCNTFMLEF DSIQEKLLAT EGENPCNDDN SMEITTTS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_53882.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188688.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | M0WQN9 | 0.0 | M0WQN9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_53882.4 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-71 | FAR1 family protein |