PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_53826.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 878aa MW: 97152 Da PI: 6.8225

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_53826.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.5	1.5e-30	67	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ rrtra+tr+gCka+++vkk++ gkw +tkle+ MLOC_53826.2 67 FYNLYARRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKHdaalspgagehagrGAAGRRTRAVTRVGCKAMIRVKKQDAGKWAITKLETA 163 *******************************************9*******9998999***************************** PP FAR1 85 HnHelap 91 HnH+l+p MLOC_53826.2 164 HNHPLVP 170 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-28	67	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-20	301	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	574	610	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-8	580	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MERAAAGSEQ GTPDSEMGDG DGDSVGYGTE MELDPSSSAY PARPSVHDGV DPYEGMEFDD 60 EEDAWTFYNL YARRVGFSTR ISVMHRSRRD GSIMSRQFVC AKEGFRTYRG KHDAALSPGA 120 GEHAGRGAAG RRTRAVTRVG CKAMIRVKKQ DAGKWAITKL ETAHNHPLVP QNQAHCLRPH 180 KPLSECGKQR SSSSSSYGVR RNGGMFLTIE PPPPTPPVPQ TTSIIAAQPL APHYISADGI 240 GNATRVILDY VKRMQAEDPA FFYAMQFVEG HPVGNVFWSD ARARTAYKDF GDAVFLDDHC 300 KRSKHELPLV TFTGVNHHCQ PVLFGCAVIR DNSEASFAWL FETLLLAMSG QHPVSLTTEY 360 DGAIQSAVHK VLPQTRHRFC SLHILNEAQC KLSDLLTAFP SLYDELVSCI NMSDTIDEFE 420 ANWEALISKV GSGHNEWLDS MYNCRRQWVP VYLRDTFFGD EPSRQGCMSR SSFFESHITA 480 KTNLQSFIQH YEKALDSCYE REVKEEFETK YSLPDIKTSS PIEKQGADLY TRTLFLRFQQ 540 ELVGASVCTL EVAEEDGKAC MYKVTTSQGS EKPRMVQFNS SDSSAKCTCQ MFEYLGIVCR 600 HILTVFGAQG ISTLPSQCIV KRWTKNATDR SSDKKPDEVI RVKELKEEQR STVEDGEQSQ 660 TWRYNSLCRE ALRYAEEGAS STEVYIVAMQ ALQEAANKVN MAKRAIGQVA PLAVMPITAQ 720 APESAGKFYD GFGQQKKRKR NSNNSRENSA PNQFMHMQQP SSYLFVGPST SGGSQGPSQL 780 VAAIPVSSCA QHGQTSGANN STDGNMTTTS VAVDKFHGFS GRDAPTTAPS SGNVVQAGET 840 KSSGVPSQIN EVINCTDYQN FHIHIVLYYA LILHCVLH

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MERAAAGSEQ GTPDSEMGDG DGDSVGYGTE MELDPSSSAY PARPSVHDGV DPYEGMEFDD  60
EEDAWTFYNL YARRVGFSTR ISVMHRSRRD GSIMSRQFVC AKEGFRTYRG KHDAALSPGA  120
GEHAGRGAAG RRTRAVTRVG CKAMIRVKKQ DAGKWAITKL ETAHNHPLVP QNQAHCLRPH  180
KPLSECGKQR SSSSSSYGVR RNGGMFLTIE PPPPTPPVPQ TTSIIAAQPL APHYISADGI  240
GNATRVILDY VKRMQAEDPA FFYAMQFVEG HPVGNVFWSD ARARTAYKDF GDAVFLDDHC  300
KRSKHELPLV TFTGVNHHCQ PVLFGCAVIR DNSEASFAWL FETLLLAMSG QHPVSLTTEY  360
DGAIQSAVHK VLPQTRHRFC SLHILNEAQC KLSDLLTAFP SLYDELVSCI NMSDTIDEFE  420
ANWEALISKV GSGHNEWLDS MYNCRRQWVP VYLRDTFFGD EPSRQGCMSR SSFFESHITA  480
KTNLQSFIQH YEKALDSCYE REVKEEFETK YSLPDIKTSS PIEKQGADLY TRTLFLRFQQ  540
ELVGASVCTL EVAEEDGKAC MYKVTTSQGS EKPRMVQFNS SDSSAKCTCQ MFEYLGIVCR  600
HILTVFGAQG ISTLPSQCIV KRWTKNATDR SSDKKPDEVI RVKELKEEQR STVEDGEQSQ  660
TWRYNSLCRE ALRYAEEGAS STEVYIVAMQ ALQEAANKVN MAKRAIGQVA PLAVMPITAQ  720
APESAGKFYD GFGQQKKRKR NSNNSRENSA PNQFMHMQQP SSYLFVGPST SGGSQGPSQL  780
VAAIPVSSCA QHGQTSGANN STDGNMTTTS VAVDKFHGFS GRDAPTTAPS SGNVVQAGET  840
KSSGVPSQIN EVINCTDYQN FHIHIVLYYA LILHCVLH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_53826.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364932	0.0	AK364932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2029I24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160726.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A287MX94	0.0	A0A287MX94_HORVV; Uncharacterized protein
STRING	MLOC_53826.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-162	FAR1-related sequence 5