PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53826.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 576aa    MW: 64390.4 Da    PI: 6.4327
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53826.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR198.48e-3167170291
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                   fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+                  rrtra+tr+gCka+++vkk++ gkw +tkle+ 
  MLOC_53826.1  67 FYNLYARRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKHdaalspgagehagrGAAGRRTRAVTRVGCKAMIRVKKQDAGKWAITKLETA 163
                   *********************************************9***********9998999********************************* PP

          FAR1  85 HnHelap 91 
                   HnH+l+p
  MLOC_53826.1 164 HNHPLVP 170
                   ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2867170IPR004330FAR1 DNA binding domain
PfamPF105511.6E-20301386IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MERAAAGSEQ GTPDSEMGDG DGDSVGYGTE MELDPSSSAY PARPSVHDGV DPYEGMEFDD  60
EEDAWTFYNL YARRVGFSTR ISVMHRSRRD GSIMSRQFVC AKEGFRTYRG KHDAALSPGA  120
GEHAGRGAAG RRTRAVTRVG CKAMIRVKKQ DAGKWAITKL ETAHNHPLVP QNQAHCLRPH  180
KPLSECGKQR SSSSSSYGVR RNGGMFLTIE PPPPTPPVPQ TTSIIAAQPL APHYISADGI  240
GNATRVILDY VKRMQAEDPA FFYAMQFVEG HPVGNVFWSD ARARTAYKDF GDAVFLDDHC  300
KRSKHELPLV TFTGVNHHCQ PVLFGCAVIR DNSEASFAWL FETLLLAMSG QHPVSLTTEY  360
DGAIQSAVHK VLPQTRHRFC SLHILNEAQC KLSDLLTAFP SLYDELVSCI NMSDTIDEFE  420
ANWEALISKV GSGHNEWLDS MYNCRRQWVP VYLRDTFFGD EPSRQGCMSR SSFFESHITA  480
KTNLQSFIQH YEKALDSCYE REVKEEFETK YSLPDIKTSS PIEKQGADLY TRTLFLRFQQ  540
ELVGASVCTL EVAEEDGIFL PSLVHKVYLR FLLSAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649320.0AK364932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2029I24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160726.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A287MX900.0A0A287MX90_HORVV; Uncharacterized protein
STRINGMLOC_53826.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-133FAR1-related sequence 5