PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GATA | ||||||||
Protein Properties | Length: 232aa MW: 24250 Da PI: 7.4963 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.4e-20 | 109 | 143 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ MLOC_5372.1 109 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 143 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-20 | 103 | 160 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.391 | 103 | 139 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-14 | 104 | 144 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.6E-17 | 107 | 143 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.25E-13 | 108 | 140 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 109 | 134 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.1E-18 | 109 | 143 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSMLFAAAPG DHHYYTKQCV DDGSYATYGG SVDCTLSLGT 60 PSTRRAEAGV RAPAAGLPWE AVPSCNGRQD IGPARADQSN AGAASARRCA NCDTTSTPLW 120 RNGPRGPKSL CNACGIRYKK EERRAAAAAA APTALASESG IEYAYGYARQ QQQQQQQQWG 180 CYGPAVAKAA SYGMFGDAAA EDGPCLPWGL GVMPSSPAFG SVREMTSLFQ YY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5372.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-130 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184096.1 | 1e-144 | GATA transcription factor 20-like | ||||
TrEMBL | M0WQ58 | 1e-168 | M0WQ58_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5372.1 | 1e-168 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 5e-28 | GATA transcription factor 20 |