PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53640.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26007.9 Da PI: 4.0476 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 24 | 48 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia++++ gRt++++k+ w+++l MLOC_53640.2 24 RWSKIAACLP-GRTDNEIKNVWNTHL 48 5*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.237 | 1 | 48 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.85E-8 | 23 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-12 | 24 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-5 | 24 | 48 | No hit | No description |
Pfam | PF00249 | 3.8E-6 | 24 | 48 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDWLLLALIR DCVAADSLEI VACRWSKIAA CLPGRTDNEI KNVWNTHLKK RVAASAGEHK 60 KPGPKTKKKT TCAAPSPSPS PSSSTTTATT TTTNCSSGES GEQSNTSSKE PEPELDKIEI 120 PMLDLGFDID IDMLLDAVPE THCPAVSSAA TSSCTSASPP CVADDDDALL DLPEIDIVPE 180 LWSIMDGACV ETAQAPWGNA APCQGNGAEA TADEDDGKEW WLEDLEKELG LWGPIEDYQH 240 QQQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_53640.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248649 | 0.0 | AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence. | |||
GenBank | AK369689 | 0.0 | AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185012.1 | 1e-100 | myb-related protein Zm1-like | ||||
TrEMBL | F2E0L8 | 1e-154 | F2E0L8_HORVV; Predicted protein | ||||
STRING | MLOC_53640.1 | 1e-155 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 8e-13 | myb domain protein 63 |