PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53640.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 332aa    MW: 36045.4 Da    PI: 4.7126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53640.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
     MLOC_53640.1 16 RGSWTPEEDMRLIAYIHKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding54.62.6e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ l++++++lG++ W++Ia++++ gRt++++k+ w+++l
     MLOC_53640.1  69 RGNFTVEEEDTLIKLHNMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23766IPR009057Homeodomain-like
PROSITE profilePS5129415.2791163IPR017930Myb domain
SuperFamilySSF466891.2E-3013110IPR009057Homeodomain-like
SMARTSM007171.7E-131565IPR001005SANT/Myb domain
PfamPF002498.8E-161663IPR001005SANT/Myb domain
CDDcd001671.10E-101863No hitNo description
PROSITE profilePS5129424.47364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2667118IPR009057Homeodomain-like
SMARTSM007171.5E-1568116IPR001005SANT/Myb domain
PfamPF002496.8E-1669114IPR001005SANT/Myb domain
CDDcd001673.34E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNRGSWT PEEDMRLIAY IHKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTVEEEDTL IKLHNMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAA  120
SAGEHKKPGP KTKKKTTCAA PSPSPSPSSS TTTATTTTTN CSSGESGEQS NTSSKEPEPE  180
LDKIEIPMLD LGFDIDIDML LDAVPETHCP AVSSAATSSC TSASPPCVAD DDDALLDLPE  240
IDIVPELWSI MDGACVETAQ APWGNAAPCQ GNGAEATADE DDGKEWWLED LEKELGLWGP  300
IEDYQHQQQP DPLGRVGPLS ASVDDPVSCY FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486490.0AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBankAK3696890.0AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185012.10.0myb-related protein Zm1-like
SwissprotP200241e-106MYB1_MAIZE; Myb-related protein Zm1
TrEMBLF2E0L80.0F2E0L8_HORVV; Predicted protein
STRINGMLOC_53640.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-70myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]