PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53627.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9780.92 Da PI: 8.4672 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5e-08 | 16 | 61 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ E + + +a + +G g W+++a mg ++++ +++ ++q MLOC_53627.2 16 EWSKKENKMFEEALAYYGEGapnLWEKVACAMGGTKSPDDVRRHFQ 61 7********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.667 | 9 | 64 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.1E-5 | 13 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-11 | 15 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 16 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.79E-4 | 16 | 61 | No hit | No description |
Pfam | PF00249 | 4.9E-7 | 16 | 61 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSSGSSRSTS PSSDSEWSKK ENKMFEEALA YYGEGAPNLW EKVACAMGGT KSPDDVRRHF 60 QILVDDVKNI QSGRIPFPKY KTQGFWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-21 | 17 | 84 | 11 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_53627.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361203 | 1e-146 | AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176359.1 | 9e-44 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-21 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A287GN63 | 5e-59 | A0A287GN63_HORVV; Uncharacterized protein | ||||
STRING | MLOC_53627.2 | 1e-59 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 6e-21 | RAD-like 1 |