PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_53580.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 357aa MW: 38590.9 Da PI: 10.2623

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_53580.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.7	6e-14	277	326	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelk 53 +r+rr++kNRe+A rsRqRK+ ++ eLe++v++L++ N++L +k++e+l+ MLOC_53580.1 277 RRQRRMIKNRESAARSRQRKQSYMMELETEVAKLKERNEELqRKQAEMLE 326 79*************************************99334555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.3E-12	273	338	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.266	275	324	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-10	277	325	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.0E-14	277	329	No hit	No description
Pfam	PF00170	5.3E-12	277	322	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.09E-23	277	329	No hit	No description
PROSITE pattern	PS00036	0	280	295	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDFPGGSGRP HQHQHQHQHQ PLPPMTPLPL TRQGSSVYSL TFDEFQSALG GPGKDFGSMN 60 MDELLRNIWT AEESQAIGAG GAGPSTAAAG PDHGGIQRQG SLTLPRTLSQ KTVDEVWRDM 120 MFFGGPSAPA AAEAPPPAQR QQTLGEVTLE EFLVRAGVVR EDMPGPPAPV SPAPVAQAPP 180 PQPQMLFPQS NMFAPMVNPL SLANGLMTGA YGQGGGGGGG GAAAMVSPSP ARPVMSNGYG 240 KMEGLNLSSL SPPPMPYVFN GGLRGRKPPA MEKVVERRQR RMIKNRESAA RSRQRKQSYM 300 MELETEVAKL KERNEELQRK QAEMLERQKN EVFEKVSRQA GPTSKRICLR RTLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDFPGGSGRP HQHQHQHQHQ PLPPMTPLPL TRQGSSVYSL TFDEFQSALG GPGKDFGSMN  60
MDELLRNIWT AEESQAIGAG GAGPSTAAAG PDHGGIQRQG SLTLPRTLSQ KTVDEVWRDM  120
MFFGGPSAPA AAEAPPPAQR QQTLGEVTLE EFLVRAGVVR EDMPGPPAPV SPAPVAQAPP  180
PQPQMLFPQS NMFAPMVNPL SLANGLMTGA YGQGGGGGGG GAAAMVSPSP ARPVMSNGYG  240
KMEGLNLSSL SPPPMPYVFN GGLRGRKPPA MEKVVERRQR RMIKNRESAA RSRQRKQSYM  300
MELETEVAKL KERNEELQRK QAEMLERQKN EVFEKVSRQA GPTSKRICLR RTLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269\|PubMed:18931143, ECO:0000269\|PubMed:19947981, ECO:0000269\|PubMed:27325665, ECO:0000269\|PubMed:27424498}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_53580.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269\|PubMed:18315698, ECO:0000269\|PubMed:18931143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ562868	0.0	KJ562868.1 Triticum aestivum bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164654.1	1e-176	ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
Swissprot	Q6Z312	1e-144	BZP23_ORYSJ; bZIP transcription factor 23
TrEMBL	M0WPT5	0.0	M0WPT5_HORVV; Uncharacterized protein
STRING	MLOC_53580.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	8e-42	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang Y,Tang N,Du H,Ye H,Xiong L Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiol., 2008. 148(4): p. 1938-52 [PMID:18931143] Shen J,Xie K,Xiong L Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol. Genet. Genomics, 2010. 284(6): p. 477-88 [PMID:20941508] Luo C,Guo C,Wang W,Wang L,Chen L Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant Cell Rep., 2014. 33(2): p. 323-36 [PMID:24247850] Sakuraba Y, et al. Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle. Plant Cell Physiol., 2015. 56(12): p. 2325-39 [PMID:26443376] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774] Dey A,Samanta MK,Gayen S,Sen SK,Maiti MK Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes. PLoS ONE, 2016. 11(3): p. e0150763 [PMID:26959651] Zong W, et al. Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes. Plant Physiol., 2016. 171(4): p. 2810-25 [PMID:27325665] Dey A,Samanta MK,Gayen S,Maiti MK The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression. BMC Plant Biol., 2016. 16(1): p. 158 [PMID:27411911] Gui J, et al. OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice. Dev. Cell, 2016. 38(2): p. 201-13 [PMID:27424498]