PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53577.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 288aa    MW: 31337.1 Da    PI: 9.8964
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53577.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19109158356
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  MLOC_53577.1 109 YRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAYRLRGE 158
                   9****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-31108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.235108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-30108165IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-22108165IPR016177DNA-binding domain
PRINTSPR003674.0E-12109120IPR001471AP2/ERF domain
CDDcd000185.25E-28109165No hitNo description
PfamPF008476.7E-13109158IPR001471AP2/ERF domain
PRINTSPR003674.0E-12147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDASLRTLSP SSFTGEVRSA VSSLLLSPGG ASALDTVFSH LPPPVTIPPL GSSVYYRQSE  60
LLRTFAATHH QASAAAATSS SSGYAVPFPF PGAAAHDAAA AAAAGRKMYR GVRQRQWGKW  120
VAEIRLPQNR VRVWLGTYDS PETAAHAYDR AAYRLRGEYA RLNFPGVMDG ADDARFPDAL  180
RHLRDAVDAK IQAIRVRMAR KRARARRLRE ESKQQQQQNN TQRAEAAPVA PTAPRPVVSE  240
SATTSETTTT TTSSYGSPEG VLSAADFECS LQQMPSFDPE LIWEMLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18107165463ATERF1
3gcc_A1e-18107165463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204ARKRARA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53577.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741320.0AK374132.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195437.11e-143ethylene-responsive transcription factor ERF061
TrEMBLF2E6F51e-150F2E6F5_HORVV; Predicted protein
STRINGMLOC_53577.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-31ERF family protein