PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53526.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 422aa    MW: 46108.3 Da    PI: 6.7158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53526.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-06180202123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C+ Cgk F+r  nL+ H+r H
  MLOC_53526.1 180 HCCKVCGKGFKRDANLRMHMRGH 202
                   569******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.73E-5179203No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5180202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531180207IPR007087Zinc finger, C2H2
SMARTSM003550.011180202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181202IPR007087Zinc finger, C2H2
SMARTSM0035537230263IPR015880Zinc finger, C2H2-like
SMARTSM0035539268290IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MCSSDHFASN NHLYLQHNHQ RLPGTTGAME ACDLERIGHE QSRHGQEAEE HRPSDSGPSA  60
ALTTYLTFLE HKIGHLRGIL CSTPRHPQQQ RAIVSAELRC IIVQLVSIAN DLASDSSTGG  120
TVDASPSEPR EERSPSPSNG THDDSDEHAG AGDGEEEEEG EGPYEVVQIE KEEILAPHAH  180
CCKVCGKGFK RDANLRMHMR GHGDQYKAPG ALARHGSPAP APVAGRRFFY SCPYAGCKRN  240
REHRDFQPLK TPVCVKNHYR RSHCDKSHVC RRCGVKRFSV LADLRTHEKH CGRDRWVCSC  300
GVSFSRKDKL FAHVAVFDSR HTPALPPSDD EAIGHCNIAP ATTTATHSIV PSSDRLLPAG  360
GVEAVNLMDQ SFSGQMLDGL SCSGDKGAMD DGRPKLSSPI GNDFCDFDGF DLLGAVAMDF  420
NF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3667080.0AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188988.10.0zinc finger protein STAR3-like
TrEMBLF2DS400.0F2DS40_HORVV; Predicted protein
STRINGMLOC_53526.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-80C2H2 family protein