PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53458.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Nin-like | ||||||||
Protein Properties | Length: 566aa MW: 62847.7 Da PI: 6.1723 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 87.5 | 1.1e-27 | 252 | 302 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCR++GI+RWP+Rkik++ MLOC_53458.8 252 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRHHGIDRWPSRKIKKV 302 689**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.688 | 241 | 322 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.2E-25 | 254 | 302 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.25E-23 | 465 | 559 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.0E-23 | 472 | 555 | No hit | No description |
PROSITE profile | PS51745 | 23.291 | 474 | 556 | IPR000270 | PB1 domain |
SMART | SM00666 | 4.6E-24 | 474 | 556 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.7E-17 | 475 | 555 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.61E-39 | 475 | 555 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MNGFHQACSE HHLFRGEGVV GTALGTNEPC FSPDITAYSK VQYPLSHYAK LFGLRAAVAI 60 RLRSVKTGSM DLILEFFLPN NCITSEEQGA MLTSLSNTIQ QASCTLRVVG VKELANDGSP 120 ETSSPTPPEV CDKPTEILDE LSSGLNIPAR TTSVDASEEV SSWIASLVDV QNNGAQGETD 180 CGLPFGFRKQ EDEGFSVTAG WPTSPVLEPE DKSFFPGFKK QEEYEVKGSP FSSDRSLSNS 240 DKAIEKRRTK IEKTVSLQEL RKHFAGSLKE AAKNLGVCPT TLKRICRHHG IDRWPSRKIK 300 KVGHSLKKLQ MVIDSVHGAE GTVRLSSLYE NFTKTTWSER ELQGDLSCPA SEQKVQLEPS 360 VPDRQCESRF SPHTSGSNSL SPTYSQSSNS SLGCSSDPKP QQQQSSAPQL AVKQEFFMEE 420 NQSSTQMKAA SHDELQLFTE EKPVTLYRSQ SHMLFSEHKP VENMSSMQEA KPDSLKIKAM 480 YGEERCIFRL QPSWGFEKLK EEIAKRFGIS QEIYHLKYLD DESEWVLLTC DADLLECIDV 540 YKASSAKTVR ISVNPTVQPV LRGSFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_53458.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252975 | 0.0 | AK252975.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176g07, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164886.1 | 0.0 | protein NLP1-like | ||||
Swissprot | Q10S83 | 0.0 | NLP1_ORYSJ; Protein NLP1 | ||||
TrEMBL | M0WPF8 | 0.0 | M0WPF8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_53458.5 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 1e-111 | Nin-like family protein |
Publications ? help Back to Top | |||
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